Basic Information

Insect: Dircenna loreta
Gene Symbol: RREB1
Assembly: GCA_963555665.1
Location: OY743090.1:10626633-10636452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.9 2.5e+02 3.1 1.4 1 23 93 116 93 116 0.94

2 12 2.7 2.3e+02 3.2 0.2 2 12 148 158 147 168 0.80

3 12 0.02 1.7 9.9 0.1 1 23 294 316 294 316 0.97

4 12 0.0011 0.092 13.9 0.4 1 23 325 347 325 347 0.99

5 12 0.00066 0.057 14.5 2.0 1 23 353 376 353 376 0.97

6 12 0.0027 0.23 12.6 1.6 1 23 725 748 725 748 0.96

7 12 0.00022 0.019 16.0 1.3 2 23 940 961 939 961 0.97

8 12 0.023 2 9.7 5.3 1 23 967 990 967 990 0.97

9 12 0.19 17 6.8 1.4 1 23 1021 1045 1021 1045 0.90

10 12 0.13 11 7.3 0.1 1 23 1068 1091 1068 1091 0.87

11 12 0.0016 0.14 13.3 0.2 2 23 1131 1152 1130 1152 0.96

12 12 0.025 2.2 9.5 5.3 1 23 1158 1180 1158 1180 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.9	2.5e+02	3.1	1.4	1	23	93	116	93	116	0.94
2	12	2.7	2.3e+02	3.2	0.2	2	12	148	158	147	168	0.80
3	12	0.02	1.7	9.9	0.1	1	23	294	316	294	316	0.97
4	12	0.0011	0.092	13.9	0.4	1	23	325	347	325	347	0.99
5	12	0.00066	0.057	14.5	2.0	1	23	353	376	353	376	0.97
6	12	0.0027	0.23	12.6	1.6	1	23	725	748	725	748	0.96
7	12	0.00022	0.019	16.0	1.3	2	23	940	961	939	961	0.97
8	12	0.023	2	9.7	5.3	1	23	967	990	967	990	0.97
9	12	0.19	17	6.8	1.4	1	23	1021	1045	1021	1045	0.90
10	12	0.13	11	7.3	0.1	1	23	1068	1091	1068	1091	0.87
11	12	0.0016	0.14	13.3	0.2	2	23	1131	1152	1130	1152	0.96
12	12	0.025	2.2	9.5	5.3	1	23	1158	1180	1158	1180	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCCGCTACTGCGCCCGCACCTCCCGCGGCAGAGCCGCCAGCATCTCAACAAATCAAAACAGAAGTATTCAGCGAGGCCAAAGTTGAAGGTGAGAATCAAGTGGGCGAAGTCATGAAGATCGAGCATCATGAGCGTGCCACGCGCACGACTAGCATCGACAGCGACAACCGTTCAGACAGAAGCGAGGAAGAAGACTGCAGAAGAGCACGGAAGAGAATGGCATCTTCGTCACCGTCTCCTATACCTTTGGATAAAAGAACTGCTAGATTCGAGTGCCGGAAATGCTTACAGCGCTTCGATTCGATTAATTCTTTCGATCTCCATCGGTTCACAGCTCATGGAGATGACAACAGAACTGGATATGACGATTATATAGATTACTCAAGCAAAAAGTTTCAAGGTATGATACATCACCACATACACGATGGATTGCGCTGCGAGCACTGCTCCCGGGAATTTCCAACTGGACAAATCTTAGATATTCATAGAAAAACATGTACCGCGTCTACAAGAATATCAAGCCCGGATCGCGATCGCAAAGAATTTTTTGCAAAGCTTGATCTTAGGAATAGACCCTTTGGCATACCAGGAACGTTAACACCACCAATGGATCGCTTTACTCCAAAATTTGAAGACAACCATCTCTCTAATGGCATTCGACATATCGATGCAGCAAGAGATCTTGCTGATATTCAATCCATATTGAGTGTCACATCTGCTGGCAGTCTTTTAGAAAGACTTACTGGAACCCGAGTAGCCTTGGAGAGTTCAGTGCTTACTCCTCCCGATACTATCATTAAGGAACGTGAACAAGAAGAAACGCAAGATAATTTTGCAGCGGAATTTAGAAGAATGAAGCTTCGAGGGGAATTCCCTTGCCGACTATGTCCAGCTAAATTTCCTAACCTTAGAGCTTTAAAAGGTCATAATCGAGTACATCTAAGTGGAACTGGACCAGGCCCATATCAGTGCAATATGTGCCCACATGCATCCTTGGATAAAGCAGCTCTGGTCAGACATATGCGCACGCACAATGGAGATAGACCATATGAATGCGCAGTCTGTAATTACGCATTTACTACAAAAGCTAATTGTGAGCGCCATCTTCGAAATCGACATGCTAAGGTTACAAGAGAAGACGTTAAACGCTCTATTATATATCACCCCTCTGAAGACCCTAACAATGATGAAGTAAATTCTAAGCTTGCCCGTGAGGAGGTCAAAAGGTCGCTGGCCTTCCATACGCCTGAAATCGATAGACGTAGTGAATCATCAGATCGCAATACACCATTAACTCACTACAACAACAGTTTTATTACCGACAGACACCCAGTCACTTCTTTAACTAAGGCTTTACCTGATATACCTACTTTAACACCAAGAGAATCTGAGCAACCTATGCCGAGAATAAAGGTCAAAGGTATCGGGCAACTGACCCAAATACCTGAATTTAGATCTCCTGATCTTACCTATAAAACAAACGATATCCAGTCAGAACCATACAGTGAAGAAGCACCAGTAGACCTTAGCACAAGTGATAACAACAGCTGCGATGTTCTCGATCTAAGTAAGAAAAAACGCGATACAGATGACGATGAACCGAAACTGCCACCTCGTTCTGCCTTCGATGATTCGACATCTGCTGCCGCCACGGCCGCTGCGACTGCTTTTGAAAAGACAAGACTGCTCTTGACTCAACAAAGACTTTTTGAATCCGCCCCACCAAAAATCGATCCCGCTTACTATACAACTCAACTGTCTCAACTCTACGCCAGTACTTTAACAGGTCTATCTGGGCTACCAATCCCACCATCATTTCCCATAAACCCGTATTTTCTACAATCATCTTTTTTTCCTCATCCAACCGATTCTCAAGaaataactgaaattaaaCAGCGTATTCATAAGGAAATATTTCGAGGTCTAAGTATGTCCGGAGGAAGATTGGTAGATGATGCTGAAACACAGCTTAAGCAAGAACCAGAAGAAGAAGAACTAAAACCTATCCCAGTAGCTTCTACACCTACTCCTCCCCCTCACGCCGAATCTCCTCGTCCATTAAGCAACCCATTAGTTCCACAAAATGATTCCGTgaaaatggtaataaaaaatggtatacTTATGCCAAAGCAAAAGCAAAGACGATACCGCACTGAAAGGCCTTTCTCCTGCTCTCAGTGTTCCGCAAGGTTTACCCTGCGCTCTAATATGGAACGTCACGTCAAACAACAGCATCCTCAACACTGGAGTGTCAGACGTCCATCGCCGAGAGCTCCTCCACCATATCCAAGTACTGACACTTTAGCCGACCGTGTCAAATATGCTTTACTGGCTCGTCACTTAGAAAGACCATTGCAAGTTGATGGATCTCCTGTCCGAAGAGATTCAGATGAAGTAGCCGATAATGAAGAGGATGAAGATGATACTTTAGTTATAGATGAAGAACCGGAAGACCAAAAACCAGAAGATCATACGGCTGCTCGTTTAGCTGCTGCCGAAATCCTTATGGCGTCGCGACAACAAGAAATGCATAAGGATTTTGATCTCAAAATTGCCGGTAATCTTATTAACAAACCACTTCCTATTGTTACTGAGAAAACAGAAACTGGAACCGATCCTCTTCCGAATCAAAATGCTACTATACCAGTGGTTCCAACTCGCAGCGATGAAGAAGAGGACGAGGAAGGTCTCGTCGCGTCTACGAGTGAGGGAAATAACTCCGGAAGTGATGAAAACAAGTCTGAATCCGATACCGGAACACAGCCACCGAAAAAGAAATCCGCTTACAGTCTAGCACCAAACCGCGTATCCTGTCCGTACTGCCACCGTAAATTCCCTTGGTCGTCATCTCTCAGACGTCACGTCCTTACTCACACTGGCCAAAAACCTTTCAAATGCCCCCATTGCCCTCTCCTCTTCACAACTAAATCCAACTGCGATCGCCATTTGCTTAGAAAGCATGGAGGGTCAGCCAAAGCAATACTCGCTGAACCGATACAAGATACCATAACTCCTCAAAATAACGACAGCAGATCTGTACCAGATAGACCATTCAAATGTGCTTCCTGTCCAACAAGCACATTTTCATCTATggagacattaaaaaaacacatgtCCTCCCGTCATGGAACTAGCGAATCCCAGCCGAGTTCCCCAAACCCGGAAACAGAGGAAGGAGACGgaagtttagtttttaaatgtcatcTTTGTGAGGCGTCCTTCGCGGACAGGACCGGAGCTCTAGGGCACCTTGCGTCAGCTCACTCTGCAGAGTACGAACAGTTAGTGAGCAAAGGAGCTCTAGACGCCGTTAGCGATCGCAGCGAAAGCGCAGATGATGACGAGAGAGGAAAATTTCCGGATCATGCAAATAGAAAGGTGGTCTGCGCGTTCTGCGTGCGTCGTTTCTGGTCAGCTGAAGACCTCCGACGCCACATGCGGACGCACTCCGGCGAGCGGCCCTTCGCCTGCGACCTGTGCCGGCGCCGGTTCACGCTCAAACATAGTATGTTGCGCCACCGGAAGAAGCACCGCGAGGACAGCGATGATGAAGACTCGCCCAGGGATAATGGATACCGCTATCAAGACGACGACGGCTCGGGCAGCGAAATACCGACCAACGTCAACAACAACAACTCCCCGCCCGCCGTCTACGACAAAAAACTGAAACTAGACATGACTTCGCGCAAAAATTCCTCTGAAAACGAAAATGACACAGAAAACGGTGGCGATCTAATCGGGAAACTACTCGGCATTCGTGACAAGACTATCATTAACAAGCTGCTGTCGTCTGCGGACGAGGCTGCCAAGTTCCTTGGTGTCAATAAATGA
Protein Sequence: MQGAATAPAPPAAEPPASQQIKTEVFSEAKVEGENQVGEVMKIEHHERATRTTSIDSDNRSDRSEEEDCRRARKRMASSSPSPIPLDKRTARFECRKCLQRFDSINSFDLHRFTAHGDDNRTGYDDYIDYSSKKFQGMIHHHIHDGLRCEHCSREFPTGQILDIHRKTCTASTRISSPDRDRKEFFAKLDLRNRPFGIPGTLTPPMDRFTPKFEDNHLSNGIRHIDAARDLADIQSILSVTSAGSLLERLTGTRVALESSVLTPPDTIIKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEIDRRSESSDRNTPLTHYNNSFITDRHPVTSLTKALPDIPTLTPRESEQPMPRIKVKGIGQLTQIPEFRSPDLTYKTNDIQSEPYSEEAPVDLSTSDNNSCDVLDLSKKKRDTDDDEPKLPPRSAFDDSTSAAATAAATAFEKTRLLLTQQRLFESAPPKIDPAYYTTQLSQLYASTLTGLSGLPIPPSFPINPYFLQSSFFPHPTDSQEITEIKQRIHKEIFRGLSMSGGRLVDDAETQLKQEPEEEELKPIPVASTPTPPPHAESPRPLSNPLVPQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPSTDTLADRVKYALLARHLERPLQVDGSPVRRDSDEVADNEEDEDDTLVIDEEPEDQKPEDHTAARLAAAEILMASRQQEMHKDFDLKIAGNLINKPLPIVTEKTETGTDPLPNQNATIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIQDTITPQNNDSRSVPDRPFKCASCPTSTFSSMETLKKHMSSRHGTSESQPSSPNPETEEGDGSLVFKCHLCEASFADRTGALGHLASAHSAEYEQLVSKGALDAVSDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREDSDDEDSPRDNGYRYQDDDGSGSEIPTNVNNNNSPPAVYDKKLKLDMTSRKNSSENENDTENGGDLIGKLLGIRDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986645;
90% Identity: iTF_00843043;
80% Identity: -