Dcar015378.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055259.1:11422821-11425187[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.043 3.7e+02 1.8 0.0 14 31 3 20 1 24 0.84 2 7 0.003 25 5.6 0.0 21 45 241 265 237 270 0.90 3 7 0.00095 8.1 7.1 0.4 7 47 299 338 295 345 0.86 4 7 0.0014 12 6.6 0.0 21 45 340 364 338 370 0.90 5 7 0.26 2.2e+03 -0.6 0.0 21 42 416 437 408 444 0.73 6 7 0.0027 23 5.7 0.1 21 45 444 468 436 473 0.87 7 7 0.00015 1.3 9.7 0.1 21 48 473 500 469 503 0.92
Sequence Information
- Coding Sequence
- ATGGATAGAAATAGAACCGTATCTGTTGATGAATTTCCAACAATATGTAGAATATGTCTATCAACCAGTGATTTGTTACCGTTTATTTCTATCAATATCCGCaaagtttttaacaatattaCGAATATAAAGgTTGTAGAAAACGATCTATTgccaaaaaatatttgcaaaaactgtttgaaccaattagaaaatatatcgCAATTCATAGAACAGTCTATAGTCAATCATTCCCTTTTAATTGGGGCATTAGATCAAGGTAATGTTAAATTATCTGAAGATTGGGCTAAAATCGACTATCACGTAAAAGAAGACGAAGATCAAAAACCACTTACAGTATTCGAATGTGATATTTGTAAAGTGAcatttaccaataaaaaattactgatgCATCATGTGAAACAGCACTTGAACCAGAAAGTTTCAGTAAACATCATTTCCAACAAGAATTCGTGTGatttaaaatgtgaaatttgtggaaaattATTTAGTACAAACATTGCTTTACTCAAACACAACAAAatgcataaaagaaaaaaagaatttcaagTTAAAAGTGTTAAATATAAATGTGAAGAATGTGATCGAGTTTTAAGTTCAATATATGCTTTAGAAAGCCATAAAAAAACACATACTGGTGAAAGACCATTTAAATGCGAACACTGCGAAAAAGATTTTCCTTACCTCGGAAGTCTCATTATCCACACAAGACTCCACACagGAGAAACCCCGTATATTTGCTCGGTTTGTAATAAAGGTTATCGAAGTTCTACTAGTcttaaaaaacataaagaaaaacaCGTCACAGAAGAGGATATCattaataatgatgaaaaaaactTGTCTGATCGTTTGCAAAAGataaaatgttcattttgtgataaaatactCAGTAAACATGGTTATGGAACTCATTTGAGAACGCATacaaatagtaaaaaaatcttttgcTGCACCATTTGCAACAAGATGTTTCAAAAACATTCTCATTTACAGAGACACGTTAGAATCCACACAGGTGAACGTCCATTTGTTTGTAAAATTTGCAACAAAGCTTTTGTTCAAAATGGCGATTTGAAACGACATACGACAATCCATTGTGACCAAAGGGAATTCCAATGTCAATATTGTgggaaacaatttttcacgaaatGTTCCCTTAGCACACATATTTTACACCATtgcaaaatttccaaaaaaaaatctcaaGGAGATGAGatgaaaatcgaaattaaatCTAAAGTAAACGAGAGACCTTTCTTATGCACTATATGTGGGAAATCGTTTACTGCGAATAGCAGCTTGAAGGTCCACAATAGATTACATACAGGGGAAAATCcatttgtttgtaatatttgtaACAAGGCCTACAACAATTCTAGTgctttgaaaaaacatataatgaGATATCATACCCAAGAAAAACCCCACGTTTGTATGGTTTGTCAAAAAGGTTTTCACGATTCGGCAAGTTTGAAAAGGCATGTCAAATTAGTACATTCGGTATtagataatattaaaaataattttgaaaactacaCTTCTAAATGa
- Protein Sequence
- MDRNRTVSVDEFPTICRICLSTSDLLPFISINIRKVFNNITNIKVVENDLLPKNICKNCLNQLENISQFIEQSIVNHSLLIGALDQGNVKLSEDWAKIDYHVKEDEDQKPLTVFECDICKVTFTNKKLLMHHVKQHLNQKVSVNIISNKNSCDLKCEICGKLFSTNIALLKHNKMHKRKKEFQVKSVKYKCEECDRVLSSIYALESHKKTHTGERPFKCEHCEKDFPYLGSLIIHTRLHTGETPYICSVCNKGYRSSTSLKKHKEKHVTEEDIINNDEKNLSDRLQKIKCSFCDKILSKHGYGTHLRTHTNSKKIFCCTICNKMFQKHSHLQRHVRIHTGERPFVCKICNKAFVQNGDLKRHTTIHCDQREFQCQYCGKQFFTKCSLSTHILHHCKISKKKSQGDEMKIEIKSKVNERPFLCTICGKSFTANSSLKVHNRLHTGENPFVCNICNKAYNNSSALKKHIMRYHTQEKPHVCMVCQKGFHDSASLKRHVKLVHSVLDNIKNNFENYTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459169;
- 90% Identity
- iTF_00459169;
- 80% Identity
- iTF_00459169;