Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055259.1:11422821-11425187[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.9e-05 0.0027 18.6 2.7 1 23 114 136 114 136 0.98

2 12 2.8e-05 0.0026 18.6 0.4 2 23 155 176 154 176 0.97

3 12 3.6e-05 0.0033 18.3 0.4 1 23 189 211 189 211 0.99

4 12 4.1e-05 0.0037 18.1 0.9 1 23 217 239 217 239 0.98

5 12 2.8e-05 0.0025 18.6 1.9 1 23 245 267 245 267 0.97

6 12 0.19 17 6.6 2.1 2 23 289 309 288 309 0.97

7 12 9.9e-05 0.0091 16.9 8.7 1 23 316 338 316 338 0.97

8 12 4.6e-07 4.2e-05 24.3 0.4 1 23 344 366 344 366 0.97

9 12 0.00045 0.041 14.8 7.2 1 23 372 394 372 394 0.98

10 12 3.8e-06 0.00035 21.4 0.7 1 23 420 442 420 442 0.95

11 12 2e-07 1.9e-05 25.3 0.7 1 23 448 471 448 471 0.97

12 12 0.00029 0.026 15.4 1.9 1 23 477 500 477 500 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.9e-05	0.0027	18.6	2.7	1	23	114	136	114	136	0.98
2	12	2.8e-05	0.0026	18.6	0.4	2	23	155	176	154	176	0.97
3	12	3.6e-05	0.0033	18.3	0.4	1	23	189	211	189	211	0.99
4	12	4.1e-05	0.0037	18.1	0.9	1	23	217	239	217	239	0.98
5	12	2.8e-05	0.0025	18.6	1.9	1	23	245	267	245	267	0.97
6	12	0.19	17	6.6	2.1	2	23	289	309	288	309	0.97
7	12	9.9e-05	0.0091	16.9	8.7	1	23	316	338	316	338	0.97
8	12	4.6e-07	4.2e-05	24.3	0.4	1	23	344	366	344	366	0.97
9	12	0.00045	0.041	14.8	7.2	1	23	372	394	372	394	0.98
10	12	3.8e-06	0.00035	21.4	0.7	1	23	420	442	420	442	0.95
11	12	2e-07	1.9e-05	25.3	0.7	1	23	448	471	448	471	0.97
12	12	0.00029	0.026	15.4	1.9	1	23	477	500	477	500	0.95

Sequence Information

Coding Sequence: ATGGATAGAAATAGAACCGTATCTGTTGATGAATTTCCAACAATATGTAGAATATGTCTATCAACCAGTGATTTGTTACCGTTTATTTCTATCAATATCCGCaaagtttttaacaatattaCGAATATAAAGgTTGTAGAAAACGATCTATTgccaaaaaatatttgcaaaaactgtttgaaccaattagaaaatatatcgCAATTCATAGAACAGTCTATAGTCAATCATTCCCTTTTAATTGGGGCATTAGATCAAGGTAATGTTAAATTATCTGAAGATTGGGCTAAAATCGACTATCACGTAAAAGAAGACGAAGATCAAAAACCACTTACAGTATTCGAATGTGATATTTGTAAAGTGAcatttaccaataaaaaattactgatgCATCATGTGAAACAGCACTTGAACCAGAAAGTTTCAGTAAACATCATTTCCAACAAGAATTCGTGTGatttaaaatgtgaaatttgtggaaaattATTTAGTACAAACATTGCTTTACTCAAACACAACAAAatgcataaaagaaaaaaagaatttcaagTTAAAAGTGTTAAATATAAATGTGAAGAATGTGATCGAGTTTTAAGTTCAATATATGCTTTAGAAAGCCATAAAAAAACACATACTGGTGAAAGACCATTTAAATGCGAACACTGCGAAAAAGATTTTCCTTACCTCGGAAGTCTCATTATCCACACAAGACTCCACACagGAGAAACCCCGTATATTTGCTCGGTTTGTAATAAAGGTTATCGAAGTTCTACTAGTcttaaaaaacataaagaaaaacaCGTCACAGAAGAGGATATCattaataatgatgaaaaaaactTGTCTGATCGTTTGCAAAAGataaaatgttcattttgtgataaaatactCAGTAAACATGGTTATGGAACTCATTTGAGAACGCATacaaatagtaaaaaaatcttttgcTGCACCATTTGCAACAAGATGTTTCAAAAACATTCTCATTTACAGAGACACGTTAGAATCCACACAGGTGAACGTCCATTTGTTTGTAAAATTTGCAACAAAGCTTTTGTTCAAAATGGCGATTTGAAACGACATACGACAATCCATTGTGACCAAAGGGAATTCCAATGTCAATATTGTgggaaacaatttttcacgaaatGTTCCCTTAGCACACATATTTTACACCATtgcaaaatttccaaaaaaaaatctcaaGGAGATGAGatgaaaatcgaaattaaatCTAAAGTAAACGAGAGACCTTTCTTATGCACTATATGTGGGAAATCGTTTACTGCGAATAGCAGCTTGAAGGTCCACAATAGATTACATACAGGGGAAAATCcatttgtttgtaatatttgtaACAAGGCCTACAACAATTCTAGTgctttgaaaaaacatataatgaGATATCATACCCAAGAAAAACCCCACGTTTGTATGGTTTGTCAAAAAGGTTTTCACGATTCGGCAAGTTTGAAAAGGCATGTCAAATTAGTACATTCGGTATtagataatattaaaaataattttgaaaactacaCTTCTAAATGa
Protein Sequence: MDRNRTVSVDEFPTICRICLSTSDLLPFISINIRKVFNNITNIKVVENDLLPKNICKNCLNQLENISQFIEQSIVNHSLLIGALDQGNVKLSEDWAKIDYHVKEDEDQKPLTVFECDICKVTFTNKKLLMHHVKQHLNQKVSVNIISNKNSCDLKCEICGKLFSTNIALLKHNKMHKRKKEFQVKSVKYKCEECDRVLSSIYALESHKKTHTGERPFKCEHCEKDFPYLGSLIIHTRLHTGETPYICSVCNKGYRSSTSLKKHKEKHVTEEDIINNDEKNLSDRLQKIKCSFCDKILSKHGYGTHLRTHTNSKKIFCCTICNKMFQKHSHLQRHVRIHTGERPFVCKICNKAFVQNGDLKRHTTIHCDQREFQCQYCGKQFFTKCSLSTHILHHCKISKKKSQGDEMKIEIKSKVNERPFLCTICGKSFTANSSLKVHNRLHTGENPFVCNICNKAYNNSSALKKHIMRYHTQEKPHVCMVCQKGFHDSASLKRHVKLVHSVLDNIKNNFENYTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459414;
90% Identity: iTF_00459414;
80% Identity: iTF_00459414;