Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055252.1:41997898-42004298[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.025 2.3 9.3 3.3 1 19 529 547 529 550 0.92

2 7 0.00035 0.032 15.2 0.4 1 21 569 589 569 590 0.95

3 7 6.8e-05 0.0062 17.4 1.8 3 23 601 621 599 621 0.97

4 7 1.7e-05 0.0016 19.3 5.4 1 23 627 649 627 649 0.98

5 7 1.4e-05 0.0013 19.5 0.3 1 23 662 684 662 684 0.96

6 7 0.00056 0.051 14.5 8.7 1 23 690 712 690 712 0.98

7 7 4.4e-05 0.004 18.0 0.5 5 23 722 740 719 740 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.025	2.3	9.3	3.3	1	19	529	547	529	550	0.92
2	7	0.00035	0.032	15.2	0.4	1	21	569	589	569	590	0.95
3	7	6.8e-05	0.0062	17.4	1.8	3	23	601	621	599	621	0.97
4	7	1.7e-05	0.0016	19.3	5.4	1	23	627	649	627	649	0.98
5	7	1.4e-05	0.0013	19.5	0.3	1	23	662	684	662	684	0.96
6	7	0.00056	0.051	14.5	8.7	1	23	690	712	690	712	0.98
7	7	4.4e-05	0.004	18.0	0.5	5	23	722	740	719	740	0.95

Sequence Information

Coding Sequence: atgTCGACAATCCGTCGTTCAGCAATCTGGAATGTGTTTACCGAAACCCATAAATCCGATTTTATAGCCACTTGTAATTTGTGTTCTCAAGAATTCTCTTACAGATCAACAACTACTAATTTAATGAAACATCTACAAAGAAAACATCCAGGTGTTGATATTAACTCTCCTATGCAGGAGCAGAAAACAGATACATTGCCCAAAGAAGTTGAAATTGTGATTGAAAGACAATTGGAAAATGCTTGTGAAGTTAAATCGTTTAAAGTAGAAGTTCAACCAGTTCCAGAAGATTGCAATTATATAGTGTTGGATGCAGCTAAACCGGTACCACAGCTATGGGattattttacgaaaatatcACCTTCAGATTGTATTGCTTCTTGTATTGTATGCCATGAAGAGTTTTCTTACAAGACAACTACCTGGAATCTTAAGAATCATCTAGATAGGAATCATCCAGAATTACAAGCAGATGTGTCTGTTGAACAAGATCAAGTATATCAAGAATCAAATGAAGAACttgatcaaaacaaaaatatagatgGAAATAAGGAAGACAAAGGACAATACCAAAATCAAACAGAACAAGTTTTGTTAGACGAAACTaaggtgtttcaaaatattgacaatGATGCAAACGATCAAAATCAGCAAGTAGATAGTAATGACGATCTACACAACGATTTTTGGAATCTAGATCAATCCGATGACGACGATCCCGATTTTAGACCATCACCGACGTTCGATGAAGAAGCTGACGTGAAAAATATATCTTCTAATAAAAAACGATCTCAGATTTGGAATGTGTTTACCGAAAAACCAAATTCTGATTCTGTAGCCATCTGCAATGTTTGTAATCAAGAATTTTGTTACAGAAGCACAACAAATAAtcttaaaaaacattttcagaGGAAGCACCCAAATGTTACTTTTGATATCAAAATAGAACCAGTTAAAGAGgaaaataattcttcttttgATTCAACTTTACGTACTGTCAAATCTGAAGGAGATGAGGACGACAGAGATTCTTCAGATGGAAATACGAAAAGGAAACGTTCACAAATCTGGAAATATTTTACGAGAAAAAAACCAGGAGAGTATATAGCGACTTGCAAtatttgcaagaaagaattgggTTTTAGATCAACTAcatcgaatttgaaaaaacatttagataGAAAACATCCTAACGTTAAGATGAAAAATGAGgatgatgaagaaaaaaagAATACTCCAGAGGTCCGTGTAAAAACGTGCTTGGTTTGTTTACAAAACGATCAAACGGAACCTAGAGAATTTTTACAAATCAATAATACAAATTCCGAAGAAGAAAAGAGTTACATGACAAAAATTCAAGAAATCATGAATCAATCTGTGGTAATAGATGAATCGCATGTAATTTGTTTACCGTGTGTCGATGATTTGGAAAAAGTGattcaatttaaagaaaaagtatCAAAAGCATTCGAATTTTGGAGTAAATTAGAGTTGGAACCTGAACCTGAAACTGATGATAATGATGCAGATAACGTTAACCATTCAGATTATAGTGATTTGGAAGAAGGAGAAACTTTGGCGAAATTTACTTGTAGCAAATGTAACAAAGTGTTTCATTCTCCATCGGTCATGTTGAAACATAACTGCAGCCAACAATCTAAAAGAGAAAAATCGTCTATGAAGAAGGAAACTTCTCAGGAGACTTTTTACTGCGAATTCTGCGGAAAAGCCTTTAACATTCGATGGAAAttgaataaacatttaaaaatatgcCAATCTAATTCTAGTAAGCAATTCGGATGTAATTTGTGTAATAGGATATTTAAAAAGGCGTACCATCTTCGAGAACACATGGCGTCCCATACGGGCGAACGAAACTACAGTTGCAATTTGTGCGGAAAAACTTTCCAAAGGTCGTCGTCGAAACACAAACATATGCGCAGTCATAACGCTAAACCGGGCGAAAAGTCGAAAAAAACACCTTTCCTATGTACTATATGTGGTAAAAGTTTCCCTTACAGTAATGGTGCTTCGAGGCACATGAGGGTACATCTAGGCGAAAGAAGACATCAGTGTCACATATGTATGAAGAAATTTAGTCAGACTACTCATCTAAAGgtcCATCTTCGTACACATTCAGGTGAAAGGCCATATGGATGTATAATTTGCGGACGAACATTTTCCTTAAACGCCAGTCTTCGAAAACATATGCGACTCCATGTTGGTTCAGGTGATTTCgtgaaattagtaaaaaatctCGACACCAGTTTTCCGTCTACGGATATGGTAACGGAAGATGGATTACAAATTCTAACAGCTGTGGCTCACGCACCTCAAGAAATCGATATAGATGGAAACCAGTGTATCGGTTAa
Protein Sequence: MSTIRRSAIWNVFTETHKSDFIATCNLCSQEFSYRSTTTNLMKHLQRKHPGVDINSPMQEQKTDTLPKEVEIVIERQLENACEVKSFKVEVQPVPEDCNYIVLDAAKPVPQLWDYFTKISPSDCIASCIVCHEEFSYKTTTWNLKNHLDRNHPELQADVSVEQDQVYQESNEELDQNKNIDGNKEDKGQYQNQTEQVLLDETKVFQNIDNDANDQNQQVDSNDDLHNDFWNLDQSDDDDPDFRPSPTFDEEADVKNISSNKKRSQIWNVFTEKPNSDSVAICNVCNQEFCYRSTTNNLKKHFQRKHPNVTFDIKIEPVKEENNSSFDSTLRTVKSEGDEDDRDSSDGNTKRKRSQIWKYFTRKKPGEYIATCNICKKELGFRSTTSNLKKHLDRKHPNVKMKNEDDEEKKNTPEVRVKTCLVCLQNDQTEPREFLQINNTNSEEEKSYMTKIQEIMNQSVVIDESHVICLPCVDDLEKVIQFKEKVSKAFEFWSKLELEPEPETDDNDADNVNHSDYSDLEEGETLAKFTCSKCNKVFHSPSVMLKHNCSQQSKREKSSMKKETSQETFYCEFCGKAFNIRWKLNKHLKICQSNSSKQFGCNLCNRIFKKAYHLREHMASHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHQCHICMKKFSQTTHLKVHLRTHSGERPYGCIICGRTFSLNASLRKHMRLHVGSGDFVKLVKNLDTSFPSTDMVTEDGLQILTAVAHAPQEIDIDGNQCIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459116; iTF_01106708; iTF_01106532;
90% Identity: iTF_00459116;
80% Identity: iTF_00459116;