Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055252.1:41997898-42004298[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.1e-14 2.1e-11 44.1 1.2 1 44 7 50 7 50 0.97

2 11 5.6e-13 5.7e-10 39.5 1.2 3 44 112 153 111 153 0.98

3 11 1.8e-11 1.8e-08 34.7 1.3 1 44 264 307 264 307 0.97

4 11 7.9e-15 8e-12 45.5 0.7 1 44 354 397 354 397 0.98

5 11 0.29 3e+02 2.0 0.1 15 27 527 539 517 548 0.83

6 11 0.14 1.4e+02 3.1 0.5 17 29 569 581 561 596 0.79

7 11 0.68 6.9e+02 0.9 2.6 13 28 595 610 582 621 0.71

8 11 0.032 33 5.1 5.3 15 38 625 649 613 650 0.77

9 11 0.00088 0.9 10.1 0.2 18 44 663 691 654 691 0.72

10 11 0.0089 9.1 6.9 5.3 18 41 691 711 685 712 0.89

11 11 0.22 2.3e+02 2.4 0.9 19 40 720 738 718 740 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.1e-14	2.1e-11	44.1	1.2	1	44	7	50	7	50	0.97
2	11	5.6e-13	5.7e-10	39.5	1.2	3	44	112	153	111	153	0.98
3	11	1.8e-11	1.8e-08	34.7	1.3	1	44	264	307	264	307	0.97
4	11	7.9e-15	8e-12	45.5	0.7	1	44	354	397	354	397	0.98
5	11	0.29	3e+02	2.0	0.1	15	27	527	539	517	548	0.83
6	11	0.14	1.4e+02	3.1	0.5	17	29	569	581	561	596	0.79
7	11	0.68	6.9e+02	0.9	2.6	13	28	595	610	582	621	0.71
8	11	0.032	33	5.1	5.3	15	38	625	649	613	650	0.77
9	11	0.00088	0.9	10.1	0.2	18	44	663	691	654	691	0.72
10	11	0.0089	9.1	6.9	5.3	18	41	691	711	685	712	0.89
11	11	0.22	2.3e+02	2.4	0.9	19	40	720	738	718	740	0.79

Sequence Information

Coding Sequence: atgTCGACAATCCGTCGTTCAGCAATCTGGAATGTGTTTACCGAAACCCATAAATCCGATTTTATAGCCACTTGTAATTTGTGTTCTCAAGAATTCTCTTACAGATCAACAACTACTAATTTAATGAAACATCTACAAAGAAAACATCCAGGTGTTGATATTAACTCTCCTATGCAGGAGCAGAAAACAGATACATTGCCCAAAGAAGTTGAAATTGTGATTGAAAGACAATTGGAAAATGCTTGTGAAGTTAAATCGTTTAAAGTAGAAGTTCAACCAGTTCCAGAAGATTGCAATTATATAGTGTTGGATGCAGCTAAACCGGTACCACAGCTATGGGattattttacgaaaatatcACCTTCAGATTGTATTGCTTCTTGTATTGTATGCCATGAAGAGTTTTCTTACAAGACAACTACCTGGAATCTTAAGAATCATCTAGATAGGAATCATCCAGAATTACAAGCAGATGTGTCTGTTGAACAAGATCAAGTATATCAAGAATCAAATGAAGAACttgatcaaaacaaaaatatagatgGAAATAAGGAAGACAAAGGACAATACCAAAATCAAACAGAACAAGTTTTGTTAGACGAAACTaaggtgtttcaaaatattgacaatGATGCAAACGATCAAAATCAGCAAGTAGATAGTAATGACGATCTACACAACGATTTTTGGAATCTAGATCAATCCGATGACGACGATCCCGATTTTAGACCATCACCGACGTTCGATGAAGAAGCTGACGTGAAAAATATATCTTCTAATAAAAAACGATCTCAGATTTGGAATGTGTTTACCGAAAAACCAAATTCTGATTCTGTAGCCATCTGCAATGTTTGTAATCAAGAATTTTGTTACAGAAGCACAACAAATAAtcttaaaaaacattttcagaGGAAGCACCCAAATGTTACTTTTGATATCAAAATAGAACCAGTTAAAGAGgaaaataattcttcttttgATTCAACTTTACGTACTGTCAAATCTGAAGGAGATGAGGACGACAGAGATTCTTCAGATGGAAATACGAAAAGGAAACGTTCACAAATCTGGAAATATTTTACGAGAAAAAAACCAGGAGAGTATATAGCGACTTGCAAtatttgcaagaaagaattgggTTTTAGATCAACTAcatcgaatttgaaaaaacatttagataGAAAACATCCTAACGTTAAGATGAAAAATGAGgatgatgaagaaaaaaagAATACTCCAGAGGTCCGTGTAAAAACGTGCTTGGTTTGTTTACAAAACGATCAAACGGAACCTAGAGAATTTTTACAAATCAATAATACAAATTCCGAAGAAGAAAAGAGTTACATGACAAAAATTCAAGAAATCATGAATCAATCTGTGGTAATAGATGAATCGCATGTAATTTGTTTACCGTGTGTCGATGATTTGGAAAAAGTGattcaatttaaagaaaaagtatCAAAAGCATTCGAATTTTGGAGTAAATTAGAGTTGGAACCTGAACCTGAAACTGATGATAATGATGCAGATAACGTTAACCATTCAGATTATAGTGATTTGGAAGAAGGAGAAACTTTGGCGAAATTTACTTGTAGCAAATGTAACAAAGTGTTTCATTCTCCATCGGTCATGTTGAAACATAACTGCAGCCAACAATCTAAAAGAGAAAAATCGTCTATGAAGAAGGAAACTTCTCAGGAGACTTTTTACTGCGAATTCTGCGGAAAAGCCTTTAACATTCGATGGAAAttgaataaacatttaaaaatatgcCAATCTAATTCTAGTAAGCAATTCGGATGTAATTTGTGTAATAGGATATTTAAAAAGGCGTACCATCTTCGAGAACACATGGCGTCCCATACGGGCGAACGAAACTACAGTTGCAATTTGTGCGGAAAAACTTTCCAAAGGTCGTCGTCGAAACACAAACATATGCGCAGTCATAACGCTAAACCGGGCGAAAAGTCGAAAAAAACACCTTTCCTATGTACTATATGTGGTAAAAGTTTCCCTTACAGTAATGGTGCTTCGAGGCACATGAGGGTACATCTAGGCGAAAGAAGACATCAGTGTCACATATGTATGAAGAAATTTAGTCAGACTACTCATCTAAAGgtcCATCTTCGTACACATTCAGGTGAAAGGCCATATGGATGTATAATTTGCGGACGAACATTTTCCTTAAACGCCAGTCTTCGAAAACATATGCGACTCCATGTTGGTTCAGGTGATTTCgtgaaattagtaaaaaatctCGACACCAGTTTTCCGTCTACGGATATGGTAACGGAAGATGGATTACAAATTCTAACAGCTGTGGCTCACGCACCTCAAGAAATCGATATAGATGGAAACCAGTGTATCGGTTAa
Protein Sequence: MSTIRRSAIWNVFTETHKSDFIATCNLCSQEFSYRSTTTNLMKHLQRKHPGVDINSPMQEQKTDTLPKEVEIVIERQLENACEVKSFKVEVQPVPEDCNYIVLDAAKPVPQLWDYFTKISPSDCIASCIVCHEEFSYKTTTWNLKNHLDRNHPELQADVSVEQDQVYQESNEELDQNKNIDGNKEDKGQYQNQTEQVLLDETKVFQNIDNDANDQNQQVDSNDDLHNDFWNLDQSDDDDPDFRPSPTFDEEADVKNISSNKKRSQIWNVFTEKPNSDSVAICNVCNQEFCYRSTTNNLKKHFQRKHPNVTFDIKIEPVKEENNSSFDSTLRTVKSEGDEDDRDSSDGNTKRKRSQIWKYFTRKKPGEYIATCNICKKELGFRSTTSNLKKHLDRKHPNVKMKNEDDEEKKNTPEVRVKTCLVCLQNDQTEPREFLQINNTNSEEEKSYMTKIQEIMNQSVVIDESHVICLPCVDDLEKVIQFKEKVSKAFEFWSKLELEPEPETDDNDADNVNHSDYSDLEEGETLAKFTCSKCNKVFHSPSVMLKHNCSQQSKREKSSMKKETSQETFYCEFCGKAFNIRWKLNKHLKICQSNSSKQFGCNLCNRIFKKAYHLREHMASHTGERNYSCNLCGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHQCHICMKKFSQTTHLKVHLRTHSGERPYGCIICGRTFSLNASLRKHMRLHVGSGDFVKLVKNLDTSFPSTDMVTEDGLQILTAVAHAPQEIDIDGNQCIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459314;
90% Identity: iTF_00459314;
80% Identity: iTF_00459314;