Dfeb010138.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284470.1:10790041-10793177[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.4 23 6.1 2.2 1 18 145 162 145 162 0.93 2 14 0.0018 0.1 13.5 0.7 2 21 171 190 171 191 0.94 3 14 0.00086 0.049 14.5 1.5 2 20 240 258 239 259 0.94 4 14 0.013 0.73 10.8 1.3 2 23 510 531 509 531 0.94 5 14 1e-05 0.00057 20.6 0.9 2 23 544 565 544 565 0.97 6 14 1.3e-05 0.00072 20.3 3.3 1 23 571 593 571 593 0.98 7 14 0.00023 0.013 16.3 1.5 2 23 599 621 598 621 0.97 8 14 0.00038 0.022 15.6 1.5 1 23 631 653 631 653 0.98 9 14 0.0064 0.37 11.7 5.3 1 23 659 681 659 681 0.98 10 14 0.00013 0.0076 17.0 0.1 3 23 690 710 689 710 0.99 11 14 7.8e-06 0.00044 20.9 1.8 1 23 716 738 716 738 0.98 12 14 3e-08 1.7e-06 28.5 3.3 1 23 744 766 744 766 0.98 13 14 1e-05 0.00058 20.6 1.4 1 23 772 794 772 794 0.99 14 14 0.00012 0.0069 17.2 1.8 1 23 799 822 799 822 0.97
Sequence Information
- Coding Sequence
- ATGCTTTCAATACATGCTTTTATTGATGGGATTCTGCCCACTGACGCTGACTTCAATAATGTTTCATTCGCACCAACAACTAAACATGCAATATCCGAAATGTTGGAAGCAATTACAGGAAATaagataacatcatcatcagaATTACCAACAAAAATATGCGTGAAATGTACTGATAATGTGAAAATGTCATTTGCATTTCAGCACCAATGTAAGagatcatttaaaatattaacatcaATGTTGAAAGACAAATTATTAACAGACCAATCGATAGAAATTGATATAAGTGATttgcataatataaattctcCGGACCTTTTGGAAGATAATATCCAAAAGAATCAGCAATTGAATAGTGACTTCAGCGATAGACCTGCTGAAGCAACGGAAAGAAATCATAAAGAAATACAAACCGATGAACGTTTATATTATGAGTGTGAGATGTGTGATTGTACATTTTTCGATGAATTTTCACTGAAGAGGTCTAATAAATCTGGCGTTGAAAGAGAATGTAAAGAATGTAAAAAGATATTTGGTACAAACCAATCATTTATACATCACATTAAAGTGTTTGAGATGTGTGgtaaaaatttggaaaatattaaaaaagcTAAACGAATTACTGACGCCAAAATAAgacatcaaaataaaattcgtGCAAATGAAGATCAATTTGACATAATAGTAGTACAGCAGAATGTCCATGGCAAATGGGAGTGTAAAACTTGTGGAAAACTGTATAATAAAGAAAGTAATTTACGTAAACATATTTGTTGTAAATCGGAAAACATTGAAACTGAAACTTCAACACCTGCAAATATGACGGTTCCAAACAACGACGAACCATCCGTAATATTACAGAATACTTCCAATATGGCAATAAAACCACCAACTAGAGTTACAAGATCAGCAACTAGGAATTCCAAAACTCCAATAAGTGATGCGACGAATTGtgaaataaaagaagaaatattgTCAGATAATGATGCAGACATAGAGGATGTACCTccatttgaaataatatttccAAATGAACTTAATTccatttgtaatattaaaattgaaaataaaactacCGATGAcgcaaataataaaaacgattTGAATTCGAATAATGATAGTGTAGTTTCTGCTGATGATTCGATTGATAATTACGATGATGCTGATGAAGACTATAGGCCTTCTGGAGAAAATCGACAGGTCAAAGATCtgaataatatttcaaattttagCAATGATTTTAATGTAGATGATACTTATAACAGTAATGATGGTAGAAATGTCGCCGATATggtattagaaaaaaatataaaagttaaagACGTGAAACATAAAGACGAATTAATAGCCGAAATACAACGTTCAAATTTGGGGGAAGCCGTTCTTCCATCCACAACATCAAATCACGATTTCAACGAACGAGCGATTACAATCAATAAGATTATCGAATCGGGATCAATTGGAAAGAAATCCGAATCAAAATTACCAGCAAAAAAATCgtcaaatcaaattaaaattaaaatatcatgcGATTTGTGCAAACATACATTTGTGGATTTTGATGCATTTACAAGACATAAGGAATGGCATGCACATTTAAAAGCAAGCTGGAAATTGAAAATTCCCCAGTGTTCAATTTGTAATGTAGTATTTACAAGAAAATCTGTGTTAACTAGACATATGTATTCCCACAGCAATGAAACACCGTTTGTATGtacaatttgtaaaaaatcatttaaatctCCCTGTAGTTTAAGAGAGCACACAAAAATCCATGACGAGAAGAGGCAAACTTGTACTAtctgtaatataaaatttgatagtTTATCGCAATTAACACTTCATAAGAGGAGGCAACATAACACTGAATTGGTTAACCACTGTACCTACTTTTGTGATATTTGTTCGGCGTTGTTTGTTTCGTTTTCGAATATGAAACGCCATATGAAACGACATACGGAACAGCGACAATATGAATGTCAGCATTGTAAGGAAACATTTAATTCGTATAAAGAAAATgagaaacataaaaaatctcattggaaaaataacaaaatacaattgtGTCCGGAATGTGGTAAGAGTATAAGAAGTGGTTCGGCTTATACCATTCATATGCGTCGTCATAACGGCATAAACCCATTTCGTTGCAAATTTTGTGAAAAAGCATTTCCACGCAAAGCTGATCTGAATGCACATGTACGACACCATACCAATTTTAGGCCACATAAATGTACAATTTGTGATAAAGCATTCACTCGGCCCTACTACTTAACAACACACATGCGAACTCATACCGGTGAACGTCCATATAAATGCACATATTGTCCAAGTGCTTATACACAATCGCAGgatttaaaaacacatattCGTCGACATACCGGCGAAcgatttaaatgtaatatttgtGATGCTATGTTTATTCAGAATCATCTTCTGTCACAACACAAACGAAATGAGCATGGTATGTCCATTCCACGGGcggttaaaaaaatgtttgccGCCTAA
- Protein Sequence
- MLSIHAFIDGILPTDADFNNVSFAPTTKHAISEMLEAITGNKITSSSELPTKICVKCTDNVKMSFAFQHQCKRSFKILTSMLKDKLLTDQSIEIDISDLHNINSPDLLEDNIQKNQQLNSDFSDRPAEATERNHKEIQTDERLYYECEMCDCTFFDEFSLKRSNKSGVERECKECKKIFGTNQSFIHHIKVFEMCGKNLENIKKAKRITDAKIRHQNKIRANEDQFDIIVVQQNVHGKWECKTCGKLYNKESNLRKHICCKSENIETETSTPANMTVPNNDEPSVILQNTSNMAIKPPTRVTRSATRNSKTPISDATNCEIKEEILSDNDADIEDVPPFEIIFPNELNSICNIKIENKTTDDANNKNDLNSNNDSVVSADDSIDNYDDADEDYRPSGENRQVKDLNNISNFSNDFNVDDTYNSNDGRNVADMVLEKNIKVKDVKHKDELIAEIQRSNLGEAVLPSTTSNHDFNERAITINKIIESGSIGKKSESKLPAKKSSNQIKIKISCDLCKHTFVDFDAFTRHKEWHAHLKASWKLKIPQCSICNVVFTRKSVLTRHMYSHSNETPFVCTICKKSFKSPCSLREHTKIHDEKRQTCTICNIKFDSLSQLTLHKRRQHNTELVNHCTYFCDICSALFVSFSNMKRHMKRHTEQRQYECQHCKETFNSYKENEKHKKSHWKNNKIQLCPECGKSIRSGSAYTIHMRRHNGINPFRCKFCEKAFPRKADLNAHVRHHTNFRPHKCTICDKAFTRPYYLTTHMRTHTGERPYKCTYCPSAYTQSQDLKTHIRRHTGERFKCNICDAMFIQNHLLSQHKRNEHGMSIPRAVKKMFAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00451261; iTF_00451230; iTF_00451265; iTF_00451244; iTF_00451233; iTF_00451234; iTF_00451246;
- 90% Identity
- -
- 80% Identity
- -