Dcae012818.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- -
- Assembly
- GCA_947459985.1
- Location
- OX381630.1:1787080-1791135[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.077 2e+03 -0.5 0.0 20 31 456 467 454 482 0.76 2 6 0.02 5.4e+02 1.4 0.0 26 50 491 515 488 517 0.91 3 6 0.00031 8 7.2 0.1 23 48 663 687 658 687 0.88 4 6 5.5e-06 0.15 12.8 0.1 8 49 687 729 685 735 0.85 5 6 0.0043 1.1e+02 3.5 0.0 21 50 786 815 781 817 0.82 6 6 0.0019 50 4.7 0.2 22 49 815 842 809 847 0.85
Sequence Information
- Coding Sequence
- ATGGCAGAAGCAAAATTCAGCGAAACACTCTTATCAAACAATTTAAATTGGATAAAACAGAAACTTAAGACAGTATGGTCATCTCCAAAGTTCTGTGGATTATGCCTAGAGAACCAAGGCAAATTTAGTTCTGTTGATATGGAGTTTGTGATCAGCAAACAGACATTCTCTAAGTGTTTGCAGGATATTGTCAATTATGTGTTTAATGATGATATTGAAAACCTCATGTCCAGCCCGCACCTATGCGACAGTTGTACGGAAAAGACGATTCAGTCTTATCTCTTTATCCACAATACTAAACAACTGTCCAAAATTCTCCAGAACTGTGTCTCAGATATTTATTCCAAAGTAATTGACGTCAATGAGCAGCTCGACGACACTGTCAAATATGACAATGCCAATGTAATGATTGTCTTGGAAAATGATACCGAATTATACAAGACAATCATAGACCTCAAGTCTATGACTGAAATTGTGCCAACTGCCACTCCAATAGCTATGAAAGAAACAGTTTTGCCTAAGCTAGAAGTTATTGAAAAACTAGAGAAACCAGACATTGTTGCACTGAAAAAGGCAGTAGAAAAACCAAGGCAGGTACAGGAAATCAAAGAAATTAAGGTAGCAAAATCAAATAGAACACCAAACATTACTTTGAAAGAAGGCCATATAGTTATCAAGCCTTTAAGCTCATTAAGAAATTCAACTCAAGTCCCTCGGTACAACACATATGAATGCGCTGACTGCCCAGATATATTTACCACCTACAGATCTCTAAAAGAACATGAAAAAGCCAAGCATAAAACATCTGTATTTCGGTGTAAATTGTGTGATAAATCTTATAACACTCGGCAATATTTGAACATACATTACAAGACCCATTCAAAAGCCAGATGCAAATTATGTCAAGTTATTCTTCCAGAAGGAGAATTAATGAATCATTTAAGGACTTACCATGTTAACTTGGTGTACCTTTGCAAGTTTTGTGACTTAGTGTACTACAGCCAAGAATCCTTAGACACTCATTTCAAAATAAGTCACTTGGTTAATGATACCAGTGGTAAATCTCAATGTATTATGTGCCTGAGAAACTTTATGGAGTCCGAATTACAGAAGCATAAATGCAAGTTTTCTTGCTCCGAATGTTTTGTAATGCCATGCATCCATTATAAGTATTTAATGTCTTATAGAGAGCAGATCTTAAGCCATGTGAATAAAGTTAAATGCATAGATTGTGATTACGTCACACGAAGAAAAGAACATTTGATTGGTCATGCTAACCGAGAACATTTGGACCATCATCCGTTTACTTGTGCAGACTGTGGACAGCAGTTTTATACTAAACTGAGTTTGAAGACCCATATAGTACAATTCCATCAAGATCTTACCTGCCCATACTGTGATTTTGAATTTAAAGATACTAACCCCTTGGAAAACCATAAAAAAGCCTGTAAGTATGTCATACGGGCATTTTCTTGTAACAACTGTAATGCATCATTTGACAATGCAGACGAGTTGACGAATCATGAGAATTTAAGGCATAATGCAGAAGTTCACGCTTGCACTCTTTGTAAAAGCAGATTCCTGACTAGCATCCAGTTAAATGAGCATCATGCAAGAGTACATGGAGGCATACAGTGTAAGAAAAGGAGGAAACACATTGAATGCTCTCTATGTGACCTAATGTTCAAAAATATTAAGGAGTTGCAGCAACATGAGAAATTGCACGATGAAAATGACATTTACCCTTGCAAAGTTTGCTCCAAACAGTTCAAATCGTTGATGAAACTATACATCCATAATCAAAGACATTATACTCACAGAATAAAATGCACAGCTTGCAATAAAAAAGTGGCTGCATCATTTTACGCACAGCATGCCGTGAGGTGTCCTTACAAAAGAGATGTGATTTTATGTCATGTTTGTGAAGTATGCGGGAAGTCTTTTCATCTAGAGTCTCTGCTTCGTTTTCACCAGAAGGTCCACATGGACCCTGAACCATGTCCTCAGTGTGACAAGATTATTAAGCCTTCAAGTCTTAAAAGGCATTTAGAGCAAGTCCACCCTGACACAACAGATAAGCCAAAGAAAAAAATTGTTCAAAGCAAGCCATCCATAGAATGTGAATTATGTGGACATATAGTGAGAAAGAAATGTGATTTAGAAGCTCATATGAATAGGTACCACTTAAAAATCAAACCTTATGTGTGTCATATATGCAGCAAAGATTTCTGTGGTAAAATACGTCTGAAAGAGCATATTGCAACTCATACAACGGACAATAGTTGCTTCTGTTCCATTTGTGGCAAGAAATTTGCCAACAGAGTATGTCTAAAAATGCATTTTAGGATGCATACAGGAGAATCACCATACTCGTGTGATATATGTGGGCAAAAATTTAGATCTTCAAGCATGATGAAAACTCATCGATTGAAGAAACATTTGGAGAAAACCATTTGCTGTCCACTATGTGATTATATGTTCTACATGGTCCGAGATATGAGGCATCACTTTAAAAAAGTGCATTGGAAGTACAAAGATGGGAGGCCGTTCAATCCCAGGGACGTTGAGGGGTTATCTAAAGAACACTACTATCTGTTTGAAGATGGGAGACTGCCGAAAATTACATCAGATGCATGA
- Protein Sequence
- MAEAKFSETLLSNNLNWIKQKLKTVWSSPKFCGLCLENQGKFSSVDMEFVISKQTFSKCLQDIVNYVFNDDIENLMSSPHLCDSCTEKTIQSYLFIHNTKQLSKILQNCVSDIYSKVIDVNEQLDDTVKYDNANVMIVLENDTELYKTIIDLKSMTEIVPTATPIAMKETVLPKLEVIEKLEKPDIVALKKAVEKPRQVQEIKEIKVAKSNRTPNITLKEGHIVIKPLSSLRNSTQVPRYNTYECADCPDIFTTYRSLKEHEKAKHKTSVFRCKLCDKSYNTRQYLNIHYKTHSKARCKLCQVILPEGELMNHLRTYHVNLVYLCKFCDLVYYSQESLDTHFKISHLVNDTSGKSQCIMCLRNFMESELQKHKCKFSCSECFVMPCIHYKYLMSYREQILSHVNKVKCIDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQDLTCPYCDFEFKDTNPLENHKKACKYVIRAFSCNNCNASFDNADELTNHENLRHNAEVHACTLCKSRFLTSIQLNEHHARVHGGIQCKKRRKHIECSLCDLMFKNIKELQQHEKLHDENDIYPCKVCSKQFKSLMKLYIHNQRHYTHRIKCTACNKKVAASFYAQHAVRCPYKRDVILCHVCEVCGKSFHLESLLRFHQKVHMDPEPCPQCDKIIKPSSLKRHLEQVHPDTTDKPKKKIVQSKPSIECELCGHIVRKKCDLEAHMNRYHLKIKPYVCHICSKDFCGKIRLKEHIATHTTDNSCFCSICGKKFANRVCLKMHFRMHTGESPYSCDICGQKFRSSSMMKTHRLKKHLEKTICCPLCDYMFYMVRDMRHHFKKVHWKYKDGRPFNPRDVEGLSKEHYYLFEDGRLPKITSDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050237;
- 90% Identity
- iTF_00450414;
- 80% Identity
- iTF_00450414;