Dcae012818.1
Basic Information
- Insect
- Diloba caeruleocephala
- Gene Symbol
- -
- Assembly
- GCA_947459985.1
- Location
- OX381630.1:1787080-1791135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.013 1.1 10.4 0.3 1 23 243 266 243 266 0.94 2 18 1.6e-05 0.0013 19.6 3.6 1 23 271 293 271 293 0.99 3 18 2.9 2.4e+02 3.0 0.2 3 23 298 318 297 318 0.84 4 18 0.017 1.4 10.0 0.9 1 23 323 346 323 346 0.94 5 18 0.031 2.6 9.2 0.5 2 23 407 429 406 429 0.92 6 18 0.00042 0.034 15.1 1.0 1 23 435 458 435 458 0.93 7 18 0.011 0.87 10.7 0.2 2 21 462 481 461 482 0.93 8 18 0.00018 0.015 16.3 0.3 1 23 490 513 490 513 0.94 9 18 4.1 3.4e+02 2.6 2.6 1 23 518 541 518 541 0.93 10 18 0.0012 0.095 13.7 0.3 2 23 554 575 553 575 0.96 11 18 0.0036 0.29 12.2 1.8 1 23 581 603 581 603 0.97 12 18 0.0058 0.48 11.5 2.8 1 23 639 661 639 661 0.96 13 18 0.02 1.7 9.8 0.1 3 23 667 687 666 687 0.93 14 18 0.0025 0.2 12.7 1.5 2 23 706 728 705 728 0.96 15 18 0.00096 0.079 14.0 2.7 1 23 734 756 734 756 0.98 16 18 0.001 0.085 13.9 6.0 2 23 763 784 762 784 0.96 17 18 2.7e-05 0.0022 18.9 2.1 1 23 790 813 790 813 0.97 18 18 0.34 28 5.9 3.4 3 23 820 841 818 841 0.94
Sequence Information
- Coding Sequence
- ATGGCAGAAGCAAAATTCAGCGAAACACTCTTATCAAACAATTTAAATTGGATAAAACAGAAACTTAAGACAGTATGGTCATCTCCAAAGTTCTGTGGATTATGCCTAGAGAACCAAGGCAAATTTAGTTCTGTTGATATGGAGTTTGTGATCAGCAAACAGACATTCTCTAAGTGTTTGCAGGATATTGTCAATTATGTGTTTAATGATGATATTGAAAACCTCATGTCCAGCCCGCACCTATGCGACAGTTGTACGGAAAAGACGATTCAGTCTTATCTCTTTATCCACAATACTAAACAACTGTCCAAAATTCTCCAGAACTGTGTCTCAGATATTTATTCCAAAGTAATTGACGTCAATGAGCAGCTCGACGACACTGTCAAATATGACAATGCCAATGTAATGATTGTCTTGGAAAATGATACCGAATTATACAAGACAATCATAGACCTCAAGTCTATGACTGAAATTGTGCCAACTGCCACTCCAATAGCTATGAAAGAAACAGTTTTGCCTAAGCTAGAAGTTATTGAAAAACTAGAGAAACCAGACATTGTTGCACTGAAAAAGGCAGTAGAAAAACCAAGGCAGGTACAGGAAATCAAAGAAATTAAGGTAGCAAAATCAAATAGAACACCAAACATTACTTTGAAAGAAGGCCATATAGTTATCAAGCCTTTAAGCTCATTAAGAAATTCAACTCAAGTCCCTCGGTACAACACATATGAATGCGCTGACTGCCCAGATATATTTACCACCTACAGATCTCTAAAAGAACATGAAAAAGCCAAGCATAAAACATCTGTATTTCGGTGTAAATTGTGTGATAAATCTTATAACACTCGGCAATATTTGAACATACATTACAAGACCCATTCAAAAGCCAGATGCAAATTATGTCAAGTTATTCTTCCAGAAGGAGAATTAATGAATCATTTAAGGACTTACCATGTTAACTTGGTGTACCTTTGCAAGTTTTGTGACTTAGTGTACTACAGCCAAGAATCCTTAGACACTCATTTCAAAATAAGTCACTTGGTTAATGATACCAGTGGTAAATCTCAATGTATTATGTGCCTGAGAAACTTTATGGAGTCCGAATTACAGAAGCATAAATGCAAGTTTTCTTGCTCCGAATGTTTTGTAATGCCATGCATCCATTATAAGTATTTAATGTCTTATAGAGAGCAGATCTTAAGCCATGTGAATAAAGTTAAATGCATAGATTGTGATTACGTCACACGAAGAAAAGAACATTTGATTGGTCATGCTAACCGAGAACATTTGGACCATCATCCGTTTACTTGTGCAGACTGTGGACAGCAGTTTTATACTAAACTGAGTTTGAAGACCCATATAGTACAATTCCATCAAGATCTTACCTGCCCATACTGTGATTTTGAATTTAAAGATACTAACCCCTTGGAAAACCATAAAAAAGCCTGTAAGTATGTCATACGGGCATTTTCTTGTAACAACTGTAATGCATCATTTGACAATGCAGACGAGTTGACGAATCATGAGAATTTAAGGCATAATGCAGAAGTTCACGCTTGCACTCTTTGTAAAAGCAGATTCCTGACTAGCATCCAGTTAAATGAGCATCATGCAAGAGTACATGGAGGCATACAGTGTAAGAAAAGGAGGAAACACATTGAATGCTCTCTATGTGACCTAATGTTCAAAAATATTAAGGAGTTGCAGCAACATGAGAAATTGCACGATGAAAATGACATTTACCCTTGCAAAGTTTGCTCCAAACAGTTCAAATCGTTGATGAAACTATACATCCATAATCAAAGACATTATACTCACAGAATAAAATGCACAGCTTGCAATAAAAAAGTGGCTGCATCATTTTACGCACAGCATGCCGTGAGGTGTCCTTACAAAAGAGATGTGATTTTATGTCATGTTTGTGAAGTATGCGGGAAGTCTTTTCATCTAGAGTCTCTGCTTCGTTTTCACCAGAAGGTCCACATGGACCCTGAACCATGTCCTCAGTGTGACAAGATTATTAAGCCTTCAAGTCTTAAAAGGCATTTAGAGCAAGTCCACCCTGACACAACAGATAAGCCAAAGAAAAAAATTGTTCAAAGCAAGCCATCCATAGAATGTGAATTATGTGGACATATAGTGAGAAAGAAATGTGATTTAGAAGCTCATATGAATAGGTACCACTTAAAAATCAAACCTTATGTGTGTCATATATGCAGCAAAGATTTCTGTGGTAAAATACGTCTGAAAGAGCATATTGCAACTCATACAACGGACAATAGTTGCTTCTGTTCCATTTGTGGCAAGAAATTTGCCAACAGAGTATGTCTAAAAATGCATTTTAGGATGCATACAGGAGAATCACCATACTCGTGTGATATATGTGGGCAAAAATTTAGATCTTCAAGCATGATGAAAACTCATCGATTGAAGAAACATTTGGAGAAAACCATTTGCTGTCCACTATGTGATTATATGTTCTACATGGTCCGAGATATGAGGCATCACTTTAAAAAAGTGCATTGGAAGTACAAAGATGGGAGGCCGTTCAATCCCAGGGACGTTGAGGGGTTATCTAAAGAACACTACTATCTGTTTGAAGATGGGAGACTGCCGAAAATTACATCAGATGCATGA
- Protein Sequence
- MAEAKFSETLLSNNLNWIKQKLKTVWSSPKFCGLCLENQGKFSSVDMEFVISKQTFSKCLQDIVNYVFNDDIENLMSSPHLCDSCTEKTIQSYLFIHNTKQLSKILQNCVSDIYSKVIDVNEQLDDTVKYDNANVMIVLENDTELYKTIIDLKSMTEIVPTATPIAMKETVLPKLEVIEKLEKPDIVALKKAVEKPRQVQEIKEIKVAKSNRTPNITLKEGHIVIKPLSSLRNSTQVPRYNTYECADCPDIFTTYRSLKEHEKAKHKTSVFRCKLCDKSYNTRQYLNIHYKTHSKARCKLCQVILPEGELMNHLRTYHVNLVYLCKFCDLVYYSQESLDTHFKISHLVNDTSGKSQCIMCLRNFMESELQKHKCKFSCSECFVMPCIHYKYLMSYREQILSHVNKVKCIDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQDLTCPYCDFEFKDTNPLENHKKACKYVIRAFSCNNCNASFDNADELTNHENLRHNAEVHACTLCKSRFLTSIQLNEHHARVHGGIQCKKRRKHIECSLCDLMFKNIKELQQHEKLHDENDIYPCKVCSKQFKSLMKLYIHNQRHYTHRIKCTACNKKVAASFYAQHAVRCPYKRDVILCHVCEVCGKSFHLESLLRFHQKVHMDPEPCPQCDKIIKPSSLKRHLEQVHPDTTDKPKKKIVQSKPSIECELCGHIVRKKCDLEAHMNRYHLKIKPYVCHICSKDFCGKIRLKEHIATHTTDNSCFCSICGKKFANRVCLKMHFRMHTGESPYSCDICGQKFRSSSMMKTHRLKKHLEKTICCPLCDYMFYMVRDMRHHFKKVHWKYKDGRPFNPRDVEGLSKEHYYLFEDGRLPKITSDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050237;
- 90% Identity
- iTF_00450665;
- 80% Identity
- iTF_00450665;