Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459018.1:7766824-7769541[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1e-08 4.3e-06 27.3 0.0 2 40 15 53 14 57 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1e-08	4.3e-06	27.3	0.0	2	40	15	53	14	57	0.92

Sequence Information

Coding Sequence: ATGTCTacgaaaaaacccaaaaaaaaaactgtgacgTACACTGCTGAAACTCTACAGAAGGCATTAAAAGAAATTCGCGAAGAACAAATCCCAATCAGAGAAGCATCACGTAAATTTAGTATTCCGAGATGTACAATTCAAGATCGATTAAGTGGCAGAAGGACGGACGAACTAAAAAAACATGGCCCCGAGCCAGTGCTGGGAGAACAAGGCGAGAAAAAGGTTGTAGATTGGCTTATAAATATAGCCAAATGTGGTTTTCCCGTAAAGAAGCAAGAGCTATTAGATACCGTTCaaaaaattttcaaagatttaaaaaagccGAATCCTTTTAAGGATGACCGTCCTGGGCAGACATGGTATCTAAACTTTTTAAAACGACATCCTGAGATATCAGTAAGATCAGCAGAAGGAATCAACAAAGCTCGCGCTAGGGTGACCGAAGAATTGATTCGGCTGTGGTTCCGCGAACTGGAAATGTTTTTAGAGCAAGAGGGGCACTTGGATATACTTGCAGAACCCGAAAGGATGTTCAACGGCGATGAAAGTGGTTTTTCACTTTGCCCAAAAACAGGAAAAGTTCTTGGCCCAAAAGGTTATCGAAATCTCTACCAAATTAAAGCCGGCAACGAAAAAGATAACCTAACAGTACTCGCAACATTCAACGCTACTGGTGAAATGTGCCCGCCATTGGTGGTTTTTCCATATATTAGACCACCAAAAAGTTTAACAGACAACATGCCACAACACTGGAGTCTAGGAAGAAGCGAATCCGGGTGGATGAATGGAGATGTATTCTTCGAATACATCACTAATGATTTCAATAATTGGATAACGGAAAATAATATCAAGAAGCCCATTCTTCTGCTAGTCGATGGACATAAGTCACATATGTCTTTAATGTTGAGCTCTGTCTGTGAAGAGCttggtattattttatatgcTCTTCCCCCGAACACTACGCACATGCTACAGCCTGCCGATGTCAGCGTGTTTGCTCCATTAAAAGCCCAGTGGAAGAGTCACATCAGAAAATTCCTTGCAAAGCCGGAAAATTTGAACAAAgctgtaacaaaaacaaatttttgtcATCTTTTTAAAGACATTATCGAAAATCCACAAATGAAAATCAATATCGTTAATGGATTCAGGCGATGTggtctttttccgtttgatcCGAACGCAGTCGACTATACGAAATGTGTTCAAAACACATTGGAACAATTTAGTCGGGCGAATCGTTCGCGTGAGAACTCGGGAATAACGAATGAAGACCTCATCGCTACCCGCAAAGTGATTCGACATTTGAGACCAGTCCTAAAAGAGAAGAAAATTGACACAAAATTGATcctaaaggaaataaaaaagctGAGAAGGTCAGAACCCAGAGAACCTCAATATATTACCGGATCTGAAGACAATACAAACTCAACACTCGACGTGTCGAGCATTCATCTTTTGTCAAATTTTTCTTCTCATTCATCTGCGAATGCTTCCAATCTCGCCCCACCGCTCGTTTCCGATCCAAACCCGCCGCATATTTCTGATGTTACGTCTGCAAATGTTATCGATCTCGCTCCTTCGCATATACATGATCCTGCCCCACTGACTCTTGTTATTGCGGGTGAAGTTCCCAAACGTACCGCTGAGAGTTTTCCAAAACATGGCTTGTCGAATTTAGTTACATCTGATTTTAGCGGCCTTGAGTTGGGAACAGTGGTTTCTCTGGACGATATTGTGGTCATACCGTTCCAAACCAGCACACCCAAAAACCGAAACCTAAGCCCCAAATCTCTAGTTCCTATTGAAATCTCTCCATCTTCAAAACCGGACTCGAATAACGTCCCTCTATGCACGGAACAGATACACCAAATCCAGATTACAGATGAACCTGGAAGTTTGGAAACTTGCACCGAAGTAGTTCCAAGTAGTAGACCCAAAGAGCAATTGGGATCTGAAAATCGTGACACTGAGTCAGTAACGTTATCTCAAGTACCAATTTTAAAAGACAACTTGTCATTATGTCCCGTTACTACCACAGAAAAATCGGAAGacgaaaatgaaattttgacatttgGCGTAACTCACCAGCAACTAGAAGAAAGGTCTCTTTTATCACTGGATGACGTTACAGTTACTCCAACTATATCAGAACATTCAGATTCTCATAACGTTCTGTCaaagaaatcatcatcttccacaATTACATCCGCATCCGCCATCAACAAAAGTTCAATAGATCCAAACACAGTATTCGAGCAACATCTGTTTATACCCCAACCTCTAGAAAAGTCCAAACAAAACGTACCCAAAGCTCGTATTCCGTCGGCGATATCAGGGAAAAAATGGCGAGAATACCATCTACTAAAAGAAAAAGCTAAACAAGAAAAGAATGAGGAGAAAGAAAAAGCTAAAGAAGCTCGAAAGCAAGCCGTGAAGCGTAAGCAAgaggaaacaaagaaaaaaaaagaaaaacacaaagcCAAGAAACTTAATAAAGGAAAACTTTTAAAGACTACAGAGTTAACATCAAAACAAAATTGTGGCCAATGCGCAAATATCTTAAACAGTGACACTGAGGACGacgaaaacaaaaatgttggcTGTGATTTTTGTACTAAATGGTTTCATTTGAAGTGCACTGATTTTATAGGACTGACATACGATGATGTTAAAGATAAACCGTTCAAGTGTAACATGTGCATTATGGATCCTTAG
Protein Sequence: MSTKKPKKKTVTYTAETLQKALKEIREEQIPIREASRKFSIPRCTIQDRLSGRRTDELKKHGPEPVLGEQGEKKVVDWLINIAKCGFPVKKQELLDTVQKIFKDLKKPNPFKDDRPGQTWYLNFLKRHPEISVRSAEGINKARARVTEELIRLWFRELEMFLEQEGHLDILAEPERMFNGDESGFSLCPKTGKVLGPKGYRNLYQIKAGNEKDNLTVLATFNATGEMCPPLVVFPYIRPPKSLTDNMPQHWSLGRSESGWMNGDVFFEYITNDFNNWITENNIKKPILLLVDGHKSHMSLMLSSVCEELGIILYALPPNTTHMLQPADVSVFAPLKAQWKSHIRKFLAKPENLNKAVTKTNFCHLFKDIIENPQMKINIVNGFRRCGLFPFDPNAVDYTKCVQNTLEQFSRANRSRENSGITNEDLIATRKVIRHLRPVLKEKKIDTKLILKEIKKLRRSEPREPQYITGSEDNTNSTLDVSSIHLLSNFSSHSSANASNLAPPLVSDPNPPHISDVTSANVIDLAPSHIHDPAPLTLVIAGEVPKRTAESFPKHGLSNLVTSDFSGLELGTVVSLDDIVVIPFQTSTPKNRNLSPKSLVPIEISPSSKPDSNNVPLCTEQIHQIQITDEPGSLETCTEVVPSSRPKEQLGSENRDTESVTLSQVPILKDNLSLCPVTTTEKSEDENEILTFGVTHQQLEERSLLSLDDVTVTPTISEHSDSHNVLSKKSSSSTITSASAINKSSIDPNTVFEQHLFIPQPLEKSKQNVPKARIPSAISGKKWREYHLLKEKAKQEKNEEKEKAKEARKQAVKRKQEETKKKKEKHKAKKLNKGKLLKTTELTSKQNCGQCANILNSDTEDDENKNVGCDFCTKWFHLKCTDFIGLTYDDVKDKPFKCNMCIMDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01182785; iTF_00636321; iTF_01208106; iTF_00636320; iTF_00951749; iTF_00951750; iTF_01246789; iTF_01246788; iTF_00832845; iTF_01182671; iTF_01182672; iTF_00634338; iTF_00634339; iTF_00634340; iTF_00634341; iTF_00634342; iTF_00634343; iTF_00634344; iTF_00634345; iTF_00634346; iTF_00634347; iTF_00634336; iTF_00044421; iTF_00044418; iTF_01209192; iTF_01208107; iTF_01208108; iTF_00657122; iTF_00447079; iTF_00382509; iTF_00382508; iTF_01064593; iTF_00373927; iTF_01246791; iTF_01246790; iTF_00035592; iTF_00035591; iTF_01166571; iTF_00851725; iTF_00449006; iTF_00667342; iTF_00667347; iTF_00667352; iTF_00667343; iTF_01090651; iTF_01166574; iTF_01166573; iTF_00826847; iTF_00826845; iTF_00826846; iTF_00683261; iTF_00726270; iTF_00726269; iTF_01246784;
90% Identity: iTF_00726269;
80% Identity: -