Basic Information

Gene Symbol
nfxl1
Assembly
GCA_000475195.1
Location
CP125325.1:22494985-22502566[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.4 2.8e+04 -3.3 1.1 15 19 182 186 181 186 0.81
2 18 6 4.9e+04 -5.9 4.2 4 10 217 223 217 223 0.56
3 18 6 4.9e+04 -4.2 1.7 5 10 257 262 257 262 0.92
4 18 2.7e-08 0.00022 22.6 13.8 1 19 268 286 268 286 0.99
5 18 4.2 3.4e+04 -3.6 1.0 6 10 311 315 310 315 0.88
6 18 2.5e-07 0.0021 19.5 17.8 1 19 321 339 321 339 0.99
7 18 6.9e-05 0.57 11.7 9.9 1 18 374 391 374 392 0.97
8 18 0.0036 29 6.2 11.7 3 18 428 444 426 445 0.89
9 18 4.4e-10 3.6e-06 28.3 11.2 1 18 454 471 454 472 0.97
10 18 3.4 2.8e+04 -3.3 1.4 5 10 500 505 500 505 0.89
11 18 0.0032 26 6.3 7.4 10 19 521 530 519 530 0.94
12 18 0.031 2.6e+02 3.2 5.9 1 12 539 549 539 549 0.96
13 18 2.6 2.2e+04 -3.0 3.5 14 19 578 583 578 583 0.89
14 18 3.6 2.9e+04 -3.4 0.9 6 10 609 613 608 613 0.81
15 18 6.2e-05 0.51 11.8 5.7 1 11 619 629 619 630 0.96
16 18 1.1 9.1e+03 -1.8 3.4 14 18 643 647 643 648 0.86
17 18 0.012 97 4.5 17.6 3 19 660 676 659 676 0.94
18 18 5.1e-06 0.042 15.3 14.7 1 16 721 735 721 741 0.89

Sequence Information

Coding Sequence
atggtgaagaaaaagaagaagaaatccccTGGTGAGGGAGATGTAACCACTAACGGAGAAACCAGTGCAACAAGTGGCTCATCTTGTACAAGCAATGATAAAACCAGTCAGCCTAAAGCTCTTACCAACCAAAATGTCCATCCCAAATTTCTCGAAGCTCAAGCAAAATTCTCATCAGTCATCAAGCAGAGTTTGGAGAACAATGAGTACCTCTCTTCatcggaagaagaagatttggacTCGGAAGCTTTGGACAACATCATGGGAAAACTCCTGGACTCCTACAGGAAAACTGGAGGTGAACACCAAAATCTGGGCAAAACTCACAAGTATTTGAATGATGCTTTCAGCAGTGGTTCAGCAGTATGCCTCATTTGTATTGCAAGTATTCGGAGGTCTGATGCTatCTGGAGTTGCAAAGGCTGCTACTGCTTCTTTCATCTGATGTGCATACAACGGTGGGGTAGAGACAACATTGCTCAGAAGAGAATTCATCATGATGAACTGCTCATTGATGTGGTACCTCCTCCACTCACATTTGCTTgTCCCAAATGTCGTACCGAGTATTCCGACAAGGACGTACCTCAGCATTATCTCTGTTTCTGCGGCGCCAAGCGTGACCCTCCGTTTGAACCCTGGCTAGTGCCTCACTCTTGTGGTGAACATTGTAACAAGGAGCTGGTCCCCTCGTGTGGTCATATTTATGGTGAAGACCCCTGTCAGTGTGGCCAGAGTAGTCAACTGCAGAGATGTAGTAATAAGGAATGGACGTGCACCAACACCTGCTCAAAATCTTTACTGTGTGGCGTGCACAAGTGCAAGCTGAGATGTCACACGGGTGCTTGCCAGCCCTGTCCTCAGCAATCAGTACAGAACTGTCTATGTGGAGCTGAACAGACTGTACGGCCCTGCTCACAGCCTGAGTGGCAGTGTGATAAGGTGTGTCCCCGGCTCCTATCCTGTGGGACACACACCTGCGGTCTCCCCTGTCACAAAGGTCAATGCCCTACTTGTCCCCTGGCTGATGTACGGACCTGCCCGTGTGGTCAACAGAAGTACTCGCTGCCCTGTACCCAAGATACCCCCTCCTGTGGTGGTACCTGTGATAAGTTGCTGGAGTGCGGGGCACATCGGTGCAGTATGAGGTGCCACAAAAATGCGTGTGGGCAGTGTCTAGAGCGCATAGTCAAGCGATGTCGATGCGGTGCCAAAATGAAAGAGGTACCCTGCGCCCGCGAATTCCTCTGCGAAACCAAATGCAAGAAGTTGCGCAACTGTTTCATTCACGCGTGCAACAGAAAGTGTTGCACGGGACGTGATTGCCCGCCCTGCGAGAAACCATGTGGACGAACCTTATCGTGTGGGAATCACAAGTGTAGCTTGGTGTGTCATGTGGGCCCTTGCTATCCGTGTAACCAGACTGAGGTGGTAACGTGTCGGTGTGGTGCGAGAAGTCTGGAGTTGTCTTGTGGCGCTAAGAAGCGAACCAAACCCCCTCGCTGTACTAAACCTTGCAAAATCAAGCCGGATTGTGATCACAGCCGAAGCGTACCTCACAACTGTCACTTTGGCCAATGTCCGCCCTGTAGTCAAGTATGTGATAAGCCTCTGGGGTGTGGACATCCCTGTCCTATGAAATGTCATTCTAATGTCCTGGTCAATCTAACCGCCCATATTAAACCTGCAGGTCCCTGGGAGAAGATCCAGCCTCAGTTGGTAAAGCAAAGTTTCCCATGTGAGCCGTGCAAAGTTCCCATCACCATCAGTTGTCATGGCAACCACACAAAGCGTACACAACCTTGTAGCCAGGTAGCAGCGTTCTCATGTAAATCCCCGTGTGAGTGGCAATTACCCTGTGGTAATCACAAGTGTCGTCTGCCCTGCCATGTGAGACAGATATCCCCTCAGGACTCCAAGGTGAGTCTGAACTGTCCCCCGTGCGATGGCCGCTGTACCCGCCCCCGCCCGTCTGGCTGTAACCACCCCTGTCCCGTCCcatgtcacccatccagttgTCCACCATGCTCACTCAAAGTGAAGGCCCGGTGTCATTGTGGCCTGGGTGTGGTATATGTGGAGTGTGCCACATGGAATAGTGCAGCTCCCGCCGCCAAGAATGAACTCATGAGGTGTCTGGCTCGCTGCCCTAAaccgttaCCATGTGGTCACACCTGCACATCCCGCTGTCACCCGGGACCCTGCCCTCTCCCCCCTCGCTGTGAAGAGAAGGTCAAGGTCAAGTGCCCGTGCAAGCGTGTCAATCGAGAGGTCGCCTGTTCGGACCTCGTATCTGGAGAGGCGAGAGTGGAGTGCAACGCTGGGTgtgataagaagaaggaacaggcCAGAAAGctcaaagaagaggaagaggagcgTCGGAAGCTCGAGGCAGAACAGAAGGCTCAGCAAGAGTTGGAACTCTTCCAGCGAAAGTTTGCCGCTCAGGGGAGAGCCAAAAAGCCGCGCGAACCCAAACCCCAGTCCGCTGTTCGCGAGAAATCCATTTGGGACAAATATTCGAACCAGATTCTGGTGGCTGCTGGCTTTGTGGCGCTGTTTGGTACGATGACCTATATTGTGGTTACCAATTTGGACGAGAACGCCACCAAGTAA
Protein Sequence
MVKKKKKKSPGEGDVTTNGETSATSGSSCTSNDKTSQPKALTNQNVHPKFLEAQAKFSSVIKQSLENNEYLSSSEEEDLDSEALDNIMGKLLDSYRKTGGEHQNLGKTHKYLNDAFSSGSAVCLICIASIRRSDAIWSCKGCYCFFHLMCIQRWGRDNIAQKRIHHDELLIDVVPPPLTFACPKCRTEYSDKDVPQHYLCFCGAKRDPPFEPWLVPHSCGEHCNKELVPSCGHIYGEDPCQCGQSSQLQRCSNKEWTCTNTCSKSLLCGVHKCKLRCHTGACQPCPQQSVQNCLCGAEQTVRPCSQPEWQCDKVCPRLLSCGTHTCGLPCHKGQCPTCPLADVRTCPCGQQKYSLPCTQDTPSCGGTCDKLLECGAHRCSMRCHKNACGQCLERIVKRCRCGAKMKEVPCAREFLCETKCKKLRNCFIHACNRKCCTGRDCPPCEKPCGRTLSCGNHKCSLVCHVGPCYPCNQTEVVTCRCGARSLELSCGAKKRTKPPRCTKPCKIKPDCDHSRSVPHNCHFGQCPPCSQVCDKPLGCGHPCPMKCHSNVLVNLTAHIKPAGPWEKIQPQLVKQSFPCEPCKVPITISCHGNHTKRTQPCSQVAAFSCKSPCEWQLPCGNHKCRLPCHVRQISPQDSKVSLNCPPCDGRCTRPRPSGCNHPCPVPCHPSSCPPCSLKVKARCHCGLGVVYVECATWNSAAPAAKNELMRCLARCPKPLPCGHTCTSRCHPGPCPLPPRCEEKVKVKCPCKRVNREVACSDLVSGEARVECNAGCDKKKEQARKLKEEEEERRKLEAEQKAQQELELFQRKFAAQGRAKKPREPKPQSAVREKSIWDKYSNQILVAAGFVALFGTMTYIVVTNLDENATK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00443627; iTF_00443628;
90% Identity
iTF_00443627;
80% Identity
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