Basic Information

Gene Symbol
nfxl1
Assembly
GCA_000475195.1
Location
CP125325.1:23823437-23830593[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3.4 2.8e+04 -3.3 1.1 15 19 182 186 181 186 0.81
2 19 6 4.9e+04 -5.9 4.2 4 10 217 223 217 223 0.56
3 19 6.8e-07 0.0056 18.1 15.1 1 19 231 248 231 248 0.99
4 19 6 4.9e+04 -4.2 1.7 5 10 272 277 272 277 0.92
5 19 2.7e-08 0.00022 22.6 13.8 1 19 283 301 283 301 0.99
6 19 4.2 3.4e+04 -3.6 1.0 6 10 326 330 325 330 0.88
7 19 2.5e-07 0.0021 19.5 17.8 1 19 336 354 336 354 0.99
8 19 6.9e-05 0.57 11.7 9.9 1 18 389 406 389 407 0.97
9 19 0.0036 29 6.2 11.7 3 18 443 459 441 460 0.89
10 19 4.4e-10 3.6e-06 28.3 11.2 1 18 469 486 469 487 0.97
11 19 3.4 2.8e+04 -3.3 1.4 5 10 515 520 515 520 0.89
12 19 0.0032 26 6.3 7.4 10 19 536 545 534 545 0.94
13 19 0.031 2.6e+02 3.2 5.9 1 12 554 564 554 564 0.96
14 19 2.6 2.2e+04 -3.0 3.5 14 19 593 598 593 598 0.89
15 19 3.6 2.9e+04 -3.4 0.9 6 10 624 628 623 628 0.81
16 19 6.2e-05 0.51 11.8 5.7 1 11 634 644 634 645 0.96
17 19 1.1 9.1e+03 -1.8 3.4 14 18 658 662 658 663 0.86
18 19 0.012 97 4.5 17.6 3 19 675 691 674 691 0.94
19 19 5.1e-06 0.042 15.3 14.7 1 16 736 750 736 756 0.89

Sequence Information

Coding Sequence
atggtgaagaaaaagaagaagaaatccccTGGTGAGGGAGATGTAACCACTAACGGAGAAACCAGTGCAACAAGTGGCTCATCTTGTACAAGCAATGATAAAACCAGTCAGCCTAAAGCTCTTACCAACCAAAATGTCCATCCCAAATTTCTCGAAGCTCAAGCAAAATTCTCATCAGTCATCAAGCAGAGTTTGGAGAACAATGAGTACCTCTCTTCttcggaagaagaagatttggacTCTGAAGCTTTGGACAACATCATGGGAAAACTCCTGGACTCCTACAGGAAAACTGGAGGTGAACACCAAAATCTGGGCAAAACTCACAAGTATTTGAATGATGCTTTCAGCAGTGGTTCAGCAGTATGCCTCATTTGTATTGCAAGTATTCGGAGGTCTGATGCTatCTGGAGTTGCAAAGGCTGCTACTGCTTCTTTCATCTGATGTGCATACAACGGTGGGGTAGAGACAACATTGCTCAGAAGAGAATTCATCATGATGAACTGCTCATTGATGTGGTACCTCCTCCACTCACATTTGCTTgTCCCAAATGTCGTACCGAGTATTCCGACAAGGACGTACCTCAGCATTATCTCTGTTTCTGCGGCGCCAAGCGTGACCCTCCGTTTGAACCCTGGCTAGTGCCTCACTCTTGTGGTGAACATTGTAACAAGGAGCTGGTCCCCTCGTGTGGTCATATTTGTCTCCTGCTGTGTCACCCGGGACCTTGTCCACCCTGTCCCAAGATGGTGAAGACCCCCTGTCAGTGTGGCCAGAGTAGTCAACTGCAGAGATGTAGTAATAAGGAATGGACGTGCACCAACACCTGCTCAAAATCTTTACTGTGTGGCGTGCACAAGTGCAAGCTGAGATGTCACACGGGTGCTTGCCAGCCCTGTCCTCAGCAATCAGTACAGAACTGTCTATGTGGAGCTGAACAGACTGTACGGCCCTGCTCACAGCCTGAGTGGCAGTGTGATAAGGTGTGTCCCCGGCTCCTATCCTGTGGGACACACACCTGCGGTCTCCCCTGTCACAAAGGTCAATGTCCTACTTGTCCCCTGGCTGATGTACGGACCTGCCCGTGTGGTCAACAGAAGTACTCGCTGCCCTGTACCCAAGATACCCCCTCCTGTGGTGGTACCTGTGATAAGTTGCTGGAGTGCGGGGCACATCGGTGCAGTATGAGGTGCCACAAAAATGCGTGTGGGCAGTGTCTAGAGCGCATAGTCAAGCGATGTCGATGCGGTGCCAAAATGAAAGAGGTACCCTGCGCTCGCGAATTCCTCTGCGAAACCAAATGCAAGAAGTTGCGCAACTGTTTCATTCACGCGTGCAACAGAAAGTGTTGCACGGGACGTGATTGCCCGCCCTGCGAGAAACCATGTGGACGAACCTTATCGTGTGGGAATCACAAGTGTAGCTTGGTGTGTCATGTGGGCCCTTGCTATCCGTGTAACCAGACTGAGGTGGTAACGTGTCGGTGTGGTGCGAGAAGTCTGGAGTTGTCTTGTGGCGCTAAGAAGCGAACCAAACCCCCTCGCTGTACTAAACCTTGCAAAATCAAGCCGGATTGTGATCACAGCCGGAGCGTACCTCACAACTGTCACTTTGGCCAATGTCCGCCCTGTAGTCAAGTATGTGATAAGCCTCTGGGGTGTGGACATCCCTGTCCTATGAAATGTCATTCTAATGTCCTGGTCAATCTAACCGCCCATATTAAACCTGCAGGTCCCTGGGAGAAGATCCAGCCTCAGTTGGTAAAGCAAAGTTTCCCATGTGAGCCGTGCAAAGTTCCCATCACCATCAGTTGTCATGGCAACCACACAAAGCGTACACAACCTTGTAGCCAGGTAGCAGCGTTCTCATGTAAATCCCCGTGTGAGTGGCAATTACCCTGTGGTAATCACAAGTGTCGTCTGCCCTGCCATGTGAGACAGATATCCCCTCAGGACTCCAAGGTGAGTCTGAACTGTCCCCCGTGCGATGGCCGCTGTACCCGCCCCCGCCCGTCTGGCTGTAACCACCCCTGTCCCGTCCcatgtcacccatccagttgTCCACCATGCTCACTCAAAGTGAAGGCCCGGTGTCATTGTGGCCTGGGTGTGGTATATGTGGAGTGTGCCACATGGAATAGTGCAGCTCCCGCCGCCAAGAATGAACTCATGAGGTGTCTGGCTCGCTGCCCTAAaccgttaCCATGTGGTCACACCTGCACATCCCGCTGTCACCCGGGACCCTGCCCTCTCCCCCCTCGCTGTGAAGAGAAGGTCAAGGTCAAGTGCCCGTGCAAGCGTGTCAATCGAGAGGTCGCCTGTTCGGACCTCGTATCTGGAGAGGCGAGAGTGGAGTGCAACGCTGGGTgtgataagaagaaggaacaggcCAGAAAGctcaaagaagaggaagaggagcgTCGGAAGCTCGAGGCAGAACAGAAGGCTCAGCAAGAGTTGGAACTCTTTCAGCGAAAGTTTGCCGCTCAGGGAGAGCCAAAAAGCCGCGCGAACCCAAACCCCAGTCCGCTGTTCGCGAGAAATCCATTTGGGACAAATATTCGAACCAGATTCTGGTGGCTGCTGGCTTTGTGGCGCTGTTTGGTACGATGA
Protein Sequence
MVKKKKKKSPGEGDVTTNGETSATSGSSCTSNDKTSQPKALTNQNVHPKFLEAQAKFSSVIKQSLENNEYLSSSEEEDLDSEALDNIMGKLLDSYRKTGGEHQNLGKTHKYLNDAFSSGSAVCLICIASIRRSDAIWSCKGCYCFFHLMCIQRWGRDNIAQKRIHHDELLIDVVPPPLTFACPKCRTEYSDKDVPQHYLCFCGAKRDPPFEPWLVPHSCGEHCNKELVPSCGHICLLLCHPGPCPPCPKMVKTPCQCGQSSQLQRCSNKEWTCTNTCSKSLLCGVHKCKLRCHTGACQPCPQQSVQNCLCGAEQTVRPCSQPEWQCDKVCPRLLSCGTHTCGLPCHKGQCPTCPLADVRTCPCGQQKYSLPCTQDTPSCGGTCDKLLECGAHRCSMRCHKNACGQCLERIVKRCRCGAKMKEVPCAREFLCETKCKKLRNCFIHACNRKCCTGRDCPPCEKPCGRTLSCGNHKCSLVCHVGPCYPCNQTEVVTCRCGARSLELSCGAKKRTKPPRCTKPCKIKPDCDHSRSVPHNCHFGQCPPCSQVCDKPLGCGHPCPMKCHSNVLVNLTAHIKPAGPWEKIQPQLVKQSFPCEPCKVPITISCHGNHTKRTQPCSQVAAFSCKSPCEWQLPCGNHKCRLPCHVRQISPQDSKVSLNCPPCDGRCTRPRPSGCNHPCPVPCHPSSCPPCSLKVKARCHCGLGVVYVECATWNSAAPAAKNELMRCLARCPKPLPCGHTCTSRCHPGPCPLPPRCEEKVKVKCPCKRVNREVACSDLVSGEARVECNAGCDKKKEQARKLKEEEEERRKLEAEQKAQQELELFQRKFAAQGEPKSRANPNPSPLFARNPFGTNIRTRFWWLLALWRCLVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00443629;
90% Identity
iTF_00443627;
80% Identity
iTF_00443627;