Basic Information

Gene Symbol
nfxl1
Assembly
GCA_000475195.1
Location
CP125325.1:23598298-23605246[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3 2.5e+04 -3.2 1.1 15 19 95 99 94 99 0.81
2 19 6 4.9e+04 -5.8 4.2 4 10 130 136 130 136 0.56
3 19 6e-07 0.005 18.2 15.1 1 19 144 161 144 161 0.99
4 19 5.7 4.7e+04 -4.0 1.7 5 10 185 190 185 190 0.92
5 19 2.4e-08 0.0002 22.7 13.8 1 19 196 214 196 214 0.99
6 19 3.7 3.1e+04 -3.4 1.0 6 10 239 243 238 243 0.88
7 19 2.3e-07 0.0019 19.6 17.8 1 19 249 267 249 267 0.99
8 19 6.2e-05 0.51 11.8 9.9 1 18 302 319 302 320 0.97
9 19 0.0032 26 6.4 11.7 3 18 356 372 354 373 0.89
10 19 3.9e-10 3.2e-06 28.5 11.2 1 18 382 399 382 400 0.97
11 19 3.1 2.5e+04 -3.2 1.4 5 10 428 433 428 433 0.89
12 19 0.0029 24 6.5 7.4 10 19 449 458 447 458 0.94
13 19 0.028 2.3e+02 3.4 5.9 1 12 467 477 467 477 0.96
14 19 2.3 1.9e+04 -2.8 3.5 14 19 506 511 506 511 0.89
15 19 3.2 2.6e+04 -3.2 0.9 6 10 537 541 536 541 0.81
16 19 5.5e-05 0.46 12.0 5.7 1 11 547 557 547 558 0.96
17 19 0.99 8.2e+03 -1.6 3.4 14 18 571 575 571 576 0.86
18 19 0.01 86 4.7 17.6 3 19 588 604 587 604 0.94
19 19 4.6e-06 0.038 15.4 14.7 1 16 649 663 649 669 0.89

Sequence Information

Coding Sequence
ATGGGAAAACTCCTGGACTCCTACAGGAAAACTGGAGGTGAACACCAAAATCTGGGCAAAACTCACAAGTATTTGAATGATGCTTTCAGCAGTGGTTCAGCAGTATGCCTCATTTGTATTGCAAGTATTCGGAGGTCTGATGCTatCTGGAGTTGCAAAGGCTGCTACTGCTTCTTTCATCTGATGTGCATACAACGGTGGGGTAGAGACAACATTGCTCAGAAGAGAATTCATCATGATGAACTGCTCATTGATGTGGTACCTCCTCCACTCACATTTGCTTgTCCCAAATGTCGTACCGAGTATTCCGACAAGGACGTACCTCAGCATTATCTCTGTTTCTGCGGCGCCAAGCGTGACCCTCCGTTTGAACCCTGGCTAGTGCCTCACTCTTGTGGTGAACATTGTAACAAGGAGCTGGTCCCCTCGTGTGGTCATATTTGTCTCCTGCTGTGTCACCCGGGACCTTGTCCACCCTGTCCCAAGATGGTGAAGACCCCCTGTCAGTGTGGCCAGAGTAGTCAACTGCAGAGATGTAGTAATAAGGAATGGACGTGCACCAACACCTGCTCAAAATCTTTACTGTGTGGCGTGCACAAGTGCAAGCTGAGATGTCACACGGGTGCTTGCCAGCCCTGTCCTCAGCAATCAGTACAGAACTGTCTATGTGGAGCTGAACAGACTGTACGGCCCTGCTCACAGCCTGAGTGGCAGTGTGATAAGGTGTGTCCCCGGCTCCTATCCTGTGGGACACACACCTGCGGTCTCCCCTGTCACAAAGGTCAATGTCCTACTTGTCCCCTGGCTGATGTACGGACCTGCCCGTGTGGTCAACAGAAGTACTCGCTGCCCTGTACCCAAGATACCCCCTCCTGTGGTGGTACCTGTGATAAGTTGCTGGAGTGCGGGGCACATCGGTGCAGTATGAGGTGCCACAAAAATGCGTGTGGGCAGTGTCTAGAGCGCATAGTCAAGCGATGTCGATGCGGTGCCAAAATGAAAGAGGTACCCTGCGCTCGCGAATTCCTCTGCGAAACCAAATGCAAGAAGTTGCGCAACTGTTTCATTCACGCGTGCAACAGAAAGTGTTGCACGGGACGTGATTGCCCGCCCTGCGAGAAACCATGTGGACGAACCTTATCGTGTGGGAATCACAAGTGTAGCTTGGTGTGTCATGTGGGCCCTTGCTATCCGTGTAACCAGACTGAGGTGGTAACGTGTCGGTGTGGTGCGAGAAGTCTGGAGTTGTCTTGTGGCGCTAAGAAGCGAACCAAACCCCCTCGCTGTACTAAACCTTGCAAAATCAAGCCGGATTGTGATCACAGCCGGAGCGTACCTCACAACTGTCACTTTGGCCAATGTCCGCCCTGTAGTCAAGTATGTGATAAGCCTCTGGGGTGTGGACATCCCTGTCCTATGAAATGTCATTCTAATGTCCTGGTCAATCTAACCGCCCATATTAAACCTGCAGGTCCCTGGGAGAAGATCCAGCCTCAGTTGGTAAAGCAAAGTTTCCCATGTGAGCCGTGCAAAGTTCCCATCACCATCAGTTGTCATGGCAACCACACAAAGCGTACACAACCTTGTAGCCAGGTAGCAGCGTTCTCATGTAAATCCCCGTGTGAGTGGCAATTACCCTGTGGTAATCACAAGTGTCGTCTGCCCTGCCATGTGAGACAGATATCCCCTCAGGACTCCAAGGTGAGTCTGAACTGTCCCCCGTGCGATGGCCGCTGTACCCGCCCCCGCCCGTCTGGCTGTAACCACCCCTGTCCCGTCCcatgtcacccatccagttgTCCACCATGCTCACTCAAAGTGAAGGCCCGGTGTCATTGTGGCCTGGGTGTGGTATATGTGGAGTGTGCCACATGGAATAGTGCAGCTCCCGCCGCCAAGAATGAACTCATGAGGTGTCTGGCTCGCTGCCCTAAaccgttaCCATGTGGTCACACCTGCACATCCCGCTGTCACCCGGGACCCTGCCCTCTCCCCCCTCGCTGTGAAGAGAAGGTCAAGGTCAAGTGCCCGTGCAAGCGTGTCAATCGAGAGGTCGCCTGTTCGGACCTCGTATCTGGAGAGGCGAGAGTGGAGTGCAACGCTGGGTgtgataagaagaaggaacaggcCAGAAAGctcaaagaagaggaagaggagcgTCGGAAGCTCGAGGCAGAACAGAAGGCTCAGCAAGAGTTGGAACTCTTTCAGCGAAAGTTTGCCGCTCAGGGAGAGCCAAAAAGCCGCGCGAACCCAAACCCCAGTCCGCTGTTCGCGAGAAATCCATTTGGGACAAATATTCGAACCAGATTCTGGTGGCTGCTGGCTTTGTGGCGCTGTTTGGTACGATGA
Protein Sequence
MGKLLDSYRKTGGEHQNLGKTHKYLNDAFSSGSAVCLICIASIRRSDAIWSCKGCYCFFHLMCIQRWGRDNIAQKRIHHDELLIDVVPPPLTFACPKCRTEYSDKDVPQHYLCFCGAKRDPPFEPWLVPHSCGEHCNKELVPSCGHICLLLCHPGPCPPCPKMVKTPCQCGQSSQLQRCSNKEWTCTNTCSKSLLCGVHKCKLRCHTGACQPCPQQSVQNCLCGAEQTVRPCSQPEWQCDKVCPRLLSCGTHTCGLPCHKGQCPTCPLADVRTCPCGQQKYSLPCTQDTPSCGGTCDKLLECGAHRCSMRCHKNACGQCLERIVKRCRCGAKMKEVPCAREFLCETKCKKLRNCFIHACNRKCCTGRDCPPCEKPCGRTLSCGNHKCSLVCHVGPCYPCNQTEVVTCRCGARSLELSCGAKKRTKPPRCTKPCKIKPDCDHSRSVPHNCHFGQCPPCSQVCDKPLGCGHPCPMKCHSNVLVNLTAHIKPAGPWEKIQPQLVKQSFPCEPCKVPITISCHGNHTKRTQPCSQVAAFSCKSPCEWQLPCGNHKCRLPCHVRQISPQDSKVSLNCPPCDGRCTRPRPSGCNHPCPVPCHPSSCPPCSLKVKARCHCGLGVVYVECATWNSAAPAAKNELMRCLARCPKPLPCGHTCTSRCHPGPCPLPPRCEEKVKVKCPCKRVNREVACSDLVSGEARVECNAGCDKKKEQARKLKEEEEERRKLEAEQKAQQELELFQRKFAAQGEPKSRANPNPSPLFARNPFGTNIRTRFWWLLALWRCLVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00443629;
90% Identity
iTF_00443628; iTF_00443629;
80% Identity
iTF_00443628;