Dcit006975.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000475195.1
- Location
- CP125322.1:52225056-52236807[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-95 4.6e-91 306.7 29.6 1 300 30 326 30 326 0.90 2 2 0.085 7e+02 0.7 5.4 120 172 324 376 323 397 0.85
Sequence Information
- Coding Sequence
- ATGCTGAGTTATGTGTGGAGTATATTCAAGTTCATCATCAGCTCTCACGTGAAAGATGCTGCGGAACTTTGCGCCAATGAGGAAACTGCGGAAGCGAGGCTATTGGCCAAGAGGCAGGCTCGGGCCGAGGCTCGTGAGATTCGACTGAGAGAAATCGAGCGACAACAGAAGGAGGCCGAGGAAAATGCCGACCGCGCCTTCGATGTTATGTCTGATACGATGAACAGGACGGTGAAGATAGCTTCACCTCGtgccctctctctcactcacatgTCAAGAAGATCCTCAGAAGATTCACTAGAAGGAGGAGAGACTAGCCAAGCTTTGCGAGATATGAGGATGGAGTGTAAAGACCTGGAGGAAAAGTTCCGGAAGGCGATGGTACAGAACGCTCAGCTAGACAATGAGAAGTGTACGGCCACCTACGAGGTAGAACTCCTTAAGGACAGGTTTGAAGAGCTGGAAGAAACTCATTCCCAGTTGAGTAAGGAGCATAAGGAGAAATGTCGAGAGTTGGATCAACTCAAGAGACTGTATAAGAAAGTAGAAGACGATTTGGCCTgGTATAAAGCTCAgctggaagagagagacaggctGATAGAAGAGAACGGGCTGGTTATTGTAGGAGGCGAACAATCATCTACCAGTAGTGATAGCGGCGCAGAAGATAGCTCTCTCACTCTAACCAATAGCAAACCAGCCAAGCGCGCCCTAGTATCTGCCCAGACGGCTCAGTTACTTAACCTTAGCGGCGAAGGCTCTCTAGACGTTCGATTGAAAAAGATCGCCGACGAGCGAAACAATCTCCTGGACGAGCTAAGCCATGTCAAGTTAGAACTGGAGGCATTACGATCCATGTCTAGTAACGGGCTAGGTAATCCACTCTCCGAACTGGataaggaacaagaagaagaagccagCAAACTCCTAGGAGACTACAAGTTCAAGTGGCAGAAGGCAGAACAAGATGTGTCTACACTACAAGCCACGGTGGCCAGACTTGAAAGTCAAGTGATCCGGTACAAATCCGCGGCAGAAACCTCGGAGAAAGTAGAAGATGAACTTAAAGTGGAGAGACGAAAACTACAACGAGAGTTACGAGAGGCACTCGCTAGGCTAGAAGAATTAGAAACGTCCAACACACACCTACAGCGAAGACTAGACAAACTAAAGAATGCAAAATCAAATTTACTCAAAGATTTGTAG
- Protein Sequence
- MLSYVWSIFKFIISSHVKDAAELCANEETAEARLLAKRQARAEAREIRLREIERQQKEAEENADRAFDVMSDTMNRTVKIASPRALSLTHMSRRSSEDSLEGGETSQALRDMRMECKDLEEKFRKAMVQNAQLDNEKCTATYEVELLKDRFEELEETHSQLSKEHKEKCRELDQLKRLYKKVEDDLAWYKAQLEERDRLIEENGLVIVGGEQSSTSSDSGAEDSSLTLTNSKPAKRALVSAQTAQLLNLSGEGSLDVRLKKIADERNNLLDELSHVKLELEALRSMSSNGLGNPLSELDKEQEEEASKLLGDYKFKWQKAEQDVSTLQATVARLESQVIRYKSAAETSEKVEDELKVERRKLQRELREALARLEELETSNTHLQRRLDKLKNAKSNLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442718; iTF_00442717;
- 90% Identity
- iTF_00442718; iTF_00442717;
- 80% Identity
- iTF_00442718;