Dcit006587.2
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000475195.1
- Location
- CP125322.1:47856616-47872644[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.8e-73 5.6e-69 234.2 22.1 1 221 30 255 30 256 0.93 2 3 4.7e-25 3.9e-21 77.1 2.3 204 300 255 343 254 343 0.86 3 3 0.016 1.3e+02 3.1 2.7 120 172 341 393 340 399 0.91
Sequence Information
- Coding Sequence
- ATGCTGAGTTATGTGTGGAGTATATTCAAGTTCATCATCAGCTCTCACGTGAAAGATGCTGCGGAACTTTGCGCCAATGAGGAAACTGCGGAAGCGAGACTATTGGCCAAGAGGCAGGCTCGGGCCGAGGCTCGTGAGATTCGACTGAGAGAAATCGAGCGACAACAGAAGGAGGCCGAGGAAAATGCCGACCGCGCCTTCGATGTTATGTCTGATACGATGAATAGGACGGTGAAGATAGCTTCACCTCGtgccctctctctcactcacatgTCAAGAAGATCCTCAGAAGATTCACTAGAAGGAGGAGAGACTAGCCAAGCCTTGCGAGATATGAGGATGGAGTGTAAAGACCTGGAGGAAAAGTTCCGGAAGGCGATGGTACAGAACGCTCAGCTAGACAATGAGAAGTGTACGGCCACCTACGAGGTAGAACTCCTTAAGGACAGGTTTGAAGAGCTGGAAGAAACTCATTCCCAGCTGAGTAAGGAGCATAAGGAGAAGTGTCGAGAGTTGGATCAACTCAAGAGACTGTATAAGAAAGTAGAAGACGATTTGGCCTGGTATAAAGCTCAGCTGGAAGAGAGGGACAGGCTGATAGAAGAGAACGGGCTGGTTATTGTAGGAGGCGAGCAATCATCTACCAGTAGTGATAGCGGCGCAGAAGATAGCTCTCTCACTCTAACCAATAGCAAACCAGCCAAACGCGCCCTAGTATCTGCCCAGACGGCACAGTTACTTAACCTTAGCGGCGAAGGCTCTCTAGTATCTGCGCAGACGGCTCAGTTACTTAACCTTAGCGGCGAAGGCTCTCTAGACGTTCGATTGAAAAAGATCGCCGACGAGCGAAACAATCTTCTGGACGAGCTAAGCCATGTCAAGTTAGAACTGGAGGCATTACGATCCATGTCTAGTAACGGGCTAGGTAATCCACTCTCCGAACTGGataaggaacaagaagaagaagccagCAAACTTCTAGGAGACTACAAGTTCAAGTGGCAGAAGGCAGAACAAGACGTGTCTACACTACAAGCCACGGTGGCCAGACTTGAAAGTCAAGTGATCCGGTACAAATCCGCGGCAGAAACCTCGGAGAAAGTAGAAGATGAACTTAAAGTGGAGAGACGAAAACTACAACGAGAGTTACGAGAGGCACTCGCTAGGCTAGAAGAATTAGAAACGTCCAACACACACCTACAGCGAAGACTAGACAAACTAAAGAATGCAAAATCAAATTTACTCAAAGATTTGTAG
- Protein Sequence
- MLSYVWSIFKFIISSHVKDAAELCANEETAEARLLAKRQARAEAREIRLREIERQQKEAEENADRAFDVMSDTMNRTVKIASPRALSLTHMSRRSSEDSLEGGETSQALRDMRMECKDLEEKFRKAMVQNAQLDNEKCTATYEVELLKDRFEELEETHSQLSKEHKEKCRELDQLKRLYKKVEDDLAWYKAQLEERDRLIEENGLVIVGGEQSSTSSDSGAEDSSLTLTNSKPAKRALVSAQTAQLLNLSGEGSLVSAQTAQLLNLSGEGSLDVRLKKIADERNNLLDELSHVKLELEALRSMSSNGLGNPLSELDKEQEEEASKLLGDYKFKWQKAEQDVSTLQATVARLESQVIRYKSAAETSEKVEDELKVERRKLQRELREALARLEELETSNTHLQRRLDKLKNAKSNLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442719;
- 90% Identity
- iTF_00442719;
- 80% Identity
- -