Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421311.1:9427725-9429296[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.026 3.6 9.7 0.1 2 23 2 24 1 24 0.91

2 15 0.0022 0.29 13.1 2.3 1 23 44 67 44 67 0.96

3 15 2.7e-05 0.0037 19.1 0.5 1 23 72 95 72 95 0.96

4 15 0.00016 0.021 16.6 1.1 1 23 100 123 100 123 0.96

5 15 0.0002 0.028 16.3 1.0 2 23 126 148 126 148 0.97

6 15 0.02 2.7 10.0 1.8 2 20 156 174 155 176 0.92

7 15 0.00055 0.074 14.9 2.2 1 23 228 251 228 251 0.93

8 15 4.5 6.1e+02 2.6 0.1 3 23 280 301 278 301 0.89

9 15 3.1 4.2e+02 3.1 0.0 2 23 324 347 323 347 0.86

10 15 8e-06 0.0011 20.7 0.2 3 23 354 375 353 375 0.94

11 15 0.00053 0.072 15.0 3.2 2 23 380 402 379 402 0.94

12 15 0.00024 0.032 16.1 5.1 1 23 407 430 407 430 0.96

13 15 2.8e-06 0.00038 22.2 4.0 1 23 434 457 434 457 0.98

14 15 0.00011 0.014 17.2 0.3 2 23 464 485 463 485 0.96

15 15 7.2e-06 0.00097 20.9 1.4 1 23 491 513 491 513 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.026	3.6	9.7	0.1	2	23	2	24	1	24	0.91
2	15	0.0022	0.29	13.1	2.3	1	23	44	67	44	67	0.96
3	15	2.7e-05	0.0037	19.1	0.5	1	23	72	95	72	95	0.96
4	15	0.00016	0.021	16.6	1.1	1	23	100	123	100	123	0.96
5	15	0.0002	0.028	16.3	1.0	2	23	126	148	126	148	0.97
6	15	0.02	2.7	10.0	1.8	2	20	156	174	155	176	0.92
7	15	0.00055	0.074	14.9	2.2	1	23	228	251	228	251	0.93
8	15	4.5	6.1e+02	2.6	0.1	3	23	280	301	278	301	0.89
9	15	3.1	4.2e+02	3.1	0.0	2	23	324	347	323	347	0.86
10	15	8e-06	0.0011	20.7	0.2	3	23	354	375	353	375	0.94
11	15	0.00053	0.072	15.0	3.2	2	23	380	402	379	402	0.94
12	15	0.00024	0.032	16.1	5.1	1	23	407	430	407	430	0.96
13	15	2.8e-06	0.00038	22.2	4.0	1	23	434	457	434	457	0.98
14	15	0.00011	0.014	17.2	0.3	2	23	464	485	463	485	0.96
15	15	7.2e-06	0.00097	20.9	1.4	1	23	491	513	491	513	0.97

Sequence Information

Coding Sequence: ATGGTTTGCGATATATGTAGTGAAACATTCAATCGATTTGAAGAAATCATCGATCATTTGATAGGTAAACATCAGTTGGAATACAACAAAAGCATTGATGTGCCATTCCAAGAATATCGATTAGTTGATTTTAAGTGTCTTCATTGCGAAGAACGGTTCTCTTATTTCGGATATTTAATAACACATGTTAATAATATGCATCCGCAAAACTGTTTCATTTGCGACGATTGTGGTGgtcgttttaataaaaagaggGATTTAACTATTCATATACGGAATTATCATCGATTAGGAGGGTATCCATGTGATTTGTGCTTTCAAAGTTTTGACACTTATCAGACTTTACGAAGACATCAGAACAACGCTCATTATAGGCAATGCAAAAGCTGCGGATCAAAATTTGCATCTCTATCACTTCTGCAGAAGCATTTAAAATCTGAACATCCTCATGATGACGGCAACTTGAAGTGCCGTTACTGCTCGAAAGAGTTCCATTCATCCATAGGCTTAAAGCAGCACACGAGCAAGTGTAAAGTGAAAAGAATCACACAAGCGGATACAAAACCTTTCCCAGAAGATAATATTGAACcgagaaaaaaacaaaatatactgCAAATTCGCCAAAACATACAATGTGTATTAAATATGTCGACGGCAGTtccttttaaattcttttctaaatattcttgCTTTTACTGCTCGAAGAAATTCTATGATTTCGACGATTTACGTCAGCATACGAGCGCTGAACATCCAGTATGCGACTTAAAACAAAAGTGCATGAAGAAGTGTAAAGGTGAAAGAATAAACGTTAAGATTGATATATCAGCTTTAGCTTGCAAAGTGTGTTGTCTTTCAGTTGTAGATTTAGATACTTTAATCACGCATTTAATAGACGAACACAAAGCGAACTATGATAAGACCATAACTGGATGTCTCGAACCTTTTCGGATCATCAAAGATAATATTCCCTGCCCAATATGTCCTGACAAGATATTCCGCTACTTCGGGATTCTATTACGTCACGTGAACGCCGAGCATAGTAACAATAACAGGATTTGTGACTTCTGCGGCCGAAGTTTCAGAAATGCGGCGAATTTAAATGTTCATATAACATATTCGCATACAGGGTCATGTGAGTGCAATGTGTGtggtattaaatacaaaaaccaATGGTCTCTAGCCAGACATAGAGCTAAATGCCATAACGCGAAAGATCACAAATGTCCGAAATGCCCAGAAACTTTCAATTCACAGTACCATAAGCAGAAACATCTGATAAAAATGCACGATATAGGCCACAAGTGTGATTACTGTGATAAGATGTTCACTAGAAACTCTTTTATGAAGGATCATATTAGAAGAattcatttaaaagaaaaaaacgttCCCTGTTCTATTTGTAACGAGAAGTTCTTTGATAATTATCTTTTAAAGATGCATATGGTTAAGCATGAGGGTGATAGGAAGTTCTGTTGCTCCGTATGTGGCAAAGCGTTCTTGAGGAAGAGCAATTTGGCTTCGCATATGGAAATGCATAAGAAGTATGGTCATGTTCAGTTGCAAATTTGA
Protein Sequence: MVCDICSETFNRFEEIIDHLIGKHQLEYNKSIDVPFQEYRLVDFKCLHCEERFSYFGYLITHVNNMHPQNCFICDDCGGRFNKKRDLTIHIRNYHRLGGYPCDLCFQSFDTYQTLRRHQNNAHYRQCKSCGSKFASLSLLQKHLKSEHPHDDGNLKCRYCSKEFHSSIGLKQHTSKCKVKRITQADTKPFPEDNIEPRKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFYDFDDLRQHTSAEHPVCDLKQKCMKKCKGERINVKIDISALACKVCCLSVVDLDTLITHLIDEHKANYDKTITGCLEPFRIIKDNIPCPICPDKIFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYSHTGSCECNVCGIKYKNQWSLARHRAKCHNAKDHKCPKCPETFNSQYHKQKHLIKMHDIGHKCDYCDKMFTRNSFMKDHIRRIHLKEKNVPCSICNEKFFDNYLLKMHMVKHEGDRKFCCSVCGKAFLRKSNLASHMEMHKKYGHVQLQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869876;
90% Identity: iTF_00636748;
80% Identity: -