Basic Information

Gene Symbol
ZNF236_1
Assembly
GCA_037043255.1
Location
CM073315.1:10656467-10664571[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00016 0.014 15.9 2.5 2 23 62 83 62 83 0.98
2 23 1.9e-08 1.6e-06 28.4 1.9 1 23 102 124 102 124 0.99
3 23 5.6e-05 0.0049 17.4 0.9 1 20 130 149 130 152 0.94
4 23 9.9e-07 8.8e-05 22.9 0.5 1 23 158 181 158 181 0.97
5 23 0.0014 0.12 13.1 2.8 1 23 190 213 190 213 0.98
6 23 1.1e-06 9.5e-05 22.8 2.8 1 23 325 347 325 347 0.98
7 23 0.026 2.3 9.0 4.2 1 23 353 375 353 375 0.98
8 23 0.00052 0.046 14.4 5.2 1 23 381 403 381 403 0.98
9 23 2.4e-07 2.2e-05 24.8 2.8 1 23 407 429 407 429 0.98
10 23 0.00095 0.083 13.5 2.9 1 23 484 506 484 506 0.98
11 23 2e-05 0.0017 18.8 3.8 1 23 512 534 512 534 0.99
12 23 4.2e-05 0.0037 17.8 1.2 1 23 540 562 540 562 0.98
13 23 9.3e-05 0.0082 16.7 7.2 1 23 568 590 568 590 0.98
14 23 5.3 4.7e+02 1.7 1.6 2 23 930 951 929 951 0.87
15 23 8.8e-06 0.00078 19.9 4.2 1 23 957 979 957 979 0.99
16 23 4.4 3.9e+02 2.0 0.0 2 23 987 1008 986 1008 0.93
17 23 9e-08 8e-06 26.2 1.4 2 23 1063 1084 1062 1084 0.98
18 23 0.0026 0.23 12.1 4.1 1 23 1090 1112 1090 1112 0.99
19 23 0.00099 0.087 13.5 3.9 1 23 1118 1140 1118 1140 0.97
20 23 0.00026 0.023 15.3 2.2 1 23 1146 1168 1146 1168 0.98
21 23 0.00034 0.03 14.9 1.2 2 23 1395 1416 1394 1416 0.97
22 23 1.5e-06 0.00013 22.3 0.8 1 23 1422 1444 1422 1444 0.98
23 23 5.4e-07 4.8e-05 23.7 3.0 1 23 1450 1473 1450 1473 0.96

Sequence Information

Coding Sequence
ATGACTCTAGCCGTCGATTGCGTGAATTTTGCTATCCTACTCATTTGCTCTCGGGTATTCCACTTCGCTCTTGGTCTCAGCTCTCAATATTACAAGcgaaacgtattttttttttatgttcaggCACAATTGGACGCTCATTTGAAACTCCATAATGAAAAGTGGTCGAGCGAAGACGTTCGAAAGTGCAAACTATGTCACAAGCAATTCACTCAGCCTGCTCTCTATCGTCTTCATATCAGAGAACATTACAGAacgaaaattgtgaaaaagacgaaaaaagggATGAGCCACAAGACGATGTACAAGTGTAAAATATGTTCAAAGTCGTTCAAAAAGCCAAGTCAATTAATGAGGCACATCCGAGTACACACAGGAGAGAAACCATTCAAGTGCAATATATGCACTCGAGCATTTACACAAAAAGGTTCTCTCCAGATTCACACGTGGAAACACATTGGCGTACGCCCCTATCGTTGTGAATATTGCAACGCGAAATTCACCCAAAAAGGTAATTTGAATGCTCACATTCTGAGGGTTCACAGTGCTCGAGAGGGTGATCCTATTTATAGCTGTACTCTGTGTACCTGCGTGTTCAAGAAATTGGGAAGTTTGAATGGTCACATGAAGAGAATGCATTCTAATCCCACAGAGGATCAGATGCAAAAATGCGACAGTTCAACGGAGGCGGATATGCAAGCGACCGTTGACAACGTGATGTCGCAGCTCGCGTCACTCGATGCAAATGTTAGAAACCAGGCGGATTCGACGGATACGTCGAATCGGCAAAGTGATATTATTCAACAGGCTCTCACGAAAAGCGGTTTcgaaagtaagaaaaaaagccCCGAGGATTCCAGTAAAAAAGCCGAGTCTCAAACGTCCTTCGTTACATTGTTGGATCGAGCCCAAGATGGCTCCTTGAGaagATATTTGACCATAAAACAACGATGCATCGGTAGCATAAGATGGTACTCCTGCAACTTTTGCCACAAGGAGTTCAAAAAACCGTCGGATCTCATCAGACACTTGCGAGTTCATACCCAAGAAAAACCTTTCaagTGTTCGTCGTGCTGTCGTTCGTTCGCATTGAAATCAACTCTAAGAGCCCACGAACGAAGGCACGCCGGTACGAAGCAATACTCTTGCGGCACATGTGACAAAACGTTCGCCTGTCACAGCAGTCTAACGTCTCACATGCGTTCCCACGTAAAGCCCCACAAGTGCGATCTCTGCGGGAAATCCTTCAGCACGAGTTCGGTATTGAAAAGTCACATGAACACTCACACGACGAGCAAATCGAAAATATCGCCGGAAGCGGAGAGTCTGGTCACTCAGATTGTTCTCGAAGAGCCACTGTTGATAAGCGACGCTGGTAACAAAATAAGCGTCGCTCACGTCAAGCCAAAGCAGAGACAAGTTTACGACAACAGCGACGAAGCCAGACCCCACAAATGTTGGGTCTGTCCGGCTGCGTTCCGAAAAATCAGCCACCTTAAGCAACATTATCTCAGGCATACGGGAGAGAGACCGTACAAATGCCCAAAATGCGAGAGgAGATTCACATCCAACAGCGTGCTCAAATCTCATTTACACACTCACGACGAATCGAGACCGTACAGTTGTTCCGTTTGTAGCGCAAAGTTTTCGACTCAGAGTAGCATGAAAAGACATTTGGTAACTCACAGTAACGTCAGGCCTTTCATGTGTCCTTATTGTCACAAGACTTTCAAAACATCGGTCAATTGTCGGAAACAcatgaaaatccacaaaaccGAGCTCGCCGAACAGCAATTGGCGCAGCAGAGAACTCAGCAAGAGCCTGAAGCGATAAAAGAAAAGCAATCGGTCGAAACACTGTCCGAAAACTTGACACTCCACGAAGACGTGGCTGTGAGTTTTCAGTCGCAAATCGCTCCAGACTTTACGCAAGCCTTCAACGATCATTTCCAGCCGATATCGTTGCCCAAGGGAAAATCGTATCTCGTCCATCACGATATGACGCAGACTTTGGAGAATCATGATTTAGCCGTCGTAGATACGGATAACTTAGGAACATCCCAGACCCTGCATGCCGACGAAACGGGCACTATTACGCTACCTAACTACTCCGGTGACCAAACTCTCACGGCAGAAAGTATACGAGAAATTGAGGAAACTTTGAATCAGCAATTATTCAATATCGGTATGAACGACCCGAGCAACGTGACTCTGAGCTCGAGAGATCAACAAACCATAAACAATATTTATGACACTGCAAAAACTTTGGATTCTGTGAATAACGTCAGTATGGCATCAAACATATTTCCTGCGCACTTCGATACCTTCGATATGAGCCAAATCACGCTTCAGACTGACACGGAAATTGACATGGGCATAAGTTCAGCAAATTCAACGAGTATGGCGAGCATTTTGCCAAGATCAGCGCAAGAAGAGCAACGTCTTGTTCCGGTAACGGATTGCAGTAGCGAAGAAGATTCGCCAAATAAATTATCGCGGCACCTGATGGTTGTGAGTTCGATGCAAACGTGTCCTGAGCTTTCGAGGCCCGTGCAAGCGTGCCCAAAATATCCAAAAGTCATTGCGAAAGCTGACACGACCGATGTCACCGACATTCTAAACGTTGATAATGAAACAAATCAACAGAAGCGTGACAACATGATGCACTCGTCGATCGCGAGGCTTGACAACGTCCAGGACAGCGTCCATTCACGAAACGAACAATTAGGACAACTCGTCGATAACAATAGAACAACCACGATCGTCCTTGAACCAGAATCTTTGATGGAATGTCACTTGTGCAACGAGAAAGACTTCACAATGGAAAAACTAAAGAGTCACTTGAATGCACATCGTGGGAATAAAGAGTTCCAGTGCAGCGAATGTTCGCTGAAATTTTGTACCAACAGTGGATTGAACCAACACATGAGAAAGCACAACGCTAAAGTAATGAACTGGAAATGTTCAATCTGCATGGAACTGTTGCCGAACGAGGAAGATTTGAAATTGCATGCTCAGATGCACGAGGATATCGAGTGGACAGGAGTTTCGATCGAGCCGGACAGTTCGCAGAAGGAGCCAGTGGCCGTGGAgccgaataaatatttgacggAGTCGGGTGAGACAACGAGCAGCAACTGCAAAGACAATGCCGGAGGGTcgaaagagaagaaagaatACTCGAACAAGTGTAAATATTgtccaaaaacatttcgtaAGCCGAGTGATTTGATAAGGCACGTGAGAACGCACACGGGAGAACGTCCGTACAAATGTAAGTTTTGTGAAAAGAGTTTCGCGGTAAAGTGCACGTTGGATTCTCATACGAAAGTCCATACAGGcaagaaaacattttgttgTCACGTGTGCAACAGTCTTTTCGCGACCAAGGGCAGTTTGAAAGTTCACATGCGTTTGCACACGGGATCGAAGCCATTCAGATGCCCGATGTGCGATCTACGTTTCCGCACTTCGGGACACCGCAAAGTCCACGAATTGACGCACACTCGAGACCCAAAAACCGCCACGAAACGCAAGTCTAAACAAATGAAAGTTAGCGCGATCGCCGAGGTCGTCGCGGAGGTGGAAAAGACGGTAGAAAAATCGGCGCAACTCTCGGCAATCGGTGAAGAAACGAGTGAGCCGAGCTTTTCGAATCTTGAAAACATCGGCATGGCAGCTGGGGGAATGACCAATCACATAACTTTCAATCCTGACGGCACGATTTTGAACAACGATTCGATGCTCTCGATCAACGAGAGCAATCAATTCGTCGCCAACTTACATTTCCTTCTGGCAAATGGCCTTGTCACCATACAAGCTGACGACGTCCTGCTGCCAGCGACGACCTTGACCTCGGACCTTAATATTACCCAGAACGACACAAGCCCCGTCAATATTCTTTCCCCCGCGACGATTATTCCCTCCGGCCAACCGAGACAACCACAAATAACTTACAACAATAGTCCCGGAGAAAATATCGTCGTAGCTCCTACGGCAATGCCAACTTTCGTCACGAATCACTTTGATCAGTCGACGACCagattgattgattcggaGGATTGCGCCAGCGCAGTGTCCCCGGAGCTCCAGAACACTCCGCCGGAAAAGAAAGTGCCTTTGCCACGCCAACAGCAAACCCCCAAATCCGTTGGTCCTGGCAAATCGAACAATTCGAAGAAAGAATGCGACGTTTGTGGCAAAGTATTCATGAAACCGTGCCAGGTCGAGCGACACAAACGTATTCACACCGGCGAACGACCCTTCAAATGTGAATTGTGCGATAAATCATTCGCGCAAAAAGCCACTTTACAGATGCACCAAAAAGCTCACACCGGAGATCGACCGCATCCCTGCCCTCATTGCGATTACTCATTCACCCAAAAGGGCAATCTCCAAACGCATCTCAAGCGAGCTCATCAACTTGACACACTTGAAGTCAAGAAAATTCGGAGAGGGCCGCAGCAATTATTGAGCGCTAAATTGATCCAAAATAATTTGGATGATAATAGAATATTAAACTTCGACGATATCTCCATCGTCGAGTATCTCAAATAa
Protein Sequence
MTLAVDCVNFAILLICSRVFHFALGLSSQYYKRNVFFFYVQAQLDAHLKLHNEKWSSEDVRKCKLCHKQFTQPALYRLHIREHYRTKIVKKTKKGMSHKTMYKCKICSKSFKKPSQLMRHIRVHTGEKPFKCNICTRAFTQKGSLQIHTWKHIGVRPYRCEYCNAKFTQKGNLNAHILRVHSAREGDPIYSCTLCTCVFKKLGSLNGHMKRMHSNPTEDQMQKCDSSTEADMQATVDNVMSQLASLDANVRNQADSTDTSNRQSDIIQQALTKSGFESKKKSPEDSSKKAESQTSFVTLLDRAQDGSLRRYLTIKQRCIGSIRWYSCNFCHKEFKKPSDLIRHLRVHTQEKPFKCSSCCRSFALKSTLRAHERRHAGTKQYSCGTCDKTFACHSSLTSHMRSHVKPHKCDLCGKSFSTSSVLKSHMNTHTTSKSKISPEAESLVTQIVLEEPLLISDAGNKISVAHVKPKQRQVYDNSDEARPHKCWVCPAAFRKISHLKQHYLRHTGERPYKCPKCERRFTSNSVLKSHLHTHDESRPYSCSVCSAKFSTQSSMKRHLVTHSNVRPFMCPYCHKTFKTSVNCRKHMKIHKTELAEQQLAQQRTQQEPEAIKEKQSVETLSENLTLHEDVAVSFQSQIAPDFTQAFNDHFQPISLPKGKSYLVHHDMTQTLENHDLAVVDTDNLGTSQTLHADETGTITLPNYSGDQTLTAESIREIEETLNQQLFNIGMNDPSNVTLSSRDQQTINNIYDTAKTLDSVNNVSMASNIFPAHFDTFDMSQITLQTDTEIDMGISSANSTSMASILPRSAQEEQRLVPVTDCSSEEDSPNKLSRHLMVVSSMQTCPELSRPVQACPKYPKVIAKADTTDVTDILNVDNETNQQKRDNMMHSSIARLDNVQDSVHSRNEQLGQLVDNNRTTTIVLEPESLMECHLCNEKDFTMEKLKSHLNAHRGNKEFQCSECSLKFCTNSGLNQHMRKHNAKVMNWKCSICMELLPNEEDLKLHAQMHEDIEWTGVSIEPDSSQKEPVAVEPNKYLTESGETTSSNCKDNAGGSKEKKEYSNKCKYCPKTFRKPSDLIRHVRTHTGERPYKCKFCEKSFAVKCTLDSHTKVHTGKKTFCCHVCNSLFATKGSLKVHMRLHTGSKPFRCPMCDLRFRTSGHRKVHELTHTRDPKTATKRKSKQMKVSAIAEVVAEVEKTVEKSAQLSAIGEETSEPSFSNLENIGMAAGGMTNHITFNPDGTILNNDSMLSINESNQFVANLHFLLANGLVTIQADDVLLPATTLTSDLNITQNDTSPVNILSPATIIPSGQPRQPQITYNNSPGENIVVAPTAMPTFVTNHFDQSTTRLIDSEDCASAVSPELQNTPPEKKVPLPRQQQTPKSVGPGKSNNSKKECDVCGKVFMKPCQVERHKRIHTGERPFKCELCDKSFAQKATLQMHQKAHTGDRPHPCPHCDYSFTQKGNLQTHLKRAHQLDTLEVKKIRRGPQQLLSAKLIQNNLDDNRILNFDDISIVEYLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2