g97820.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML021138.1:39053-40408[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 9e+03 -0.4 0.1 40 48 49 57 34 62 0.82 2 14 0.45 2.7e+03 1.3 0.1 24 47 93 116 83 121 0.82 3 14 0.1 6.1e+02 3.3 0.0 21 44 118 141 115 146 0.89 4 14 0.014 84 6.1 0.0 21 44 146 169 142 175 0.90 5 14 0.42 2.5e+03 1.4 0.0 26 46 178 198 170 204 0.86 6 14 0.45 2.7e+03 1.3 0.1 24 48 204 228 199 233 0.82 7 14 0.26 1.5e+03 2.1 0.0 23 51 231 259 228 262 0.84 8 14 0.26 1.6e+03 2.0 0.0 23 48 259 284 255 289 0.83 9 14 0.39 2.3e+03 1.5 0.0 23 46 287 310 284 317 0.85 10 14 0.25 1.5e+03 2.1 0.1 26 45 318 337 313 340 0.90 11 14 0.023 1.4e+02 5.4 0.0 21 49 341 369 336 373 0.82 12 14 0.22 1.3e+03 2.3 0.0 23 48 371 396 366 401 0.83 13 14 0.051 3e+02 4.3 0.0 23 45 399 421 395 425 0.90 14 14 0.009 53 6.7 0.0 21 45 425 449 420 451 0.87
Sequence Information
- Coding Sequence
- ATGATTTTAGGTTGCAAATATGAAGATAGACTAACTGATGAAAACAACGAATTACGTCATGTTATAAATAACCAATTAAACCAACGTACAACTGAGGGTAGGAAAGTGAATTCCGTTGAAAAATCTTTTGCTTGCCAGATTTGTTTAAGAAGACATTTGACACAACAGCATACTAGAGAAAAATCTGTCACATATGAAGCCTGCTCAGATACACGAGAAAAATCATTTGGATGTGAAGTATACACAAGACAGTTTACGCAAAATGCAAACTTAACACCATTTCGTTGTGAAATATGCACAAAACAGTTTTCAAAGCCTGCTCACTTAAAAAGACATATGGtggtgcatactggtgaaaaaccatttggatGTGAAATATGCACAAAACAGTTTTCAAAGCCTGCTCACTTAAAAAGACATATGGtggtgcatactggtgaaaaaccatttggatGTGATATATGCACAAAACAGTTTACACGAAGTGACAACTTAAAAGTTCATATGAGAACGCACACTAGGGAATTATTTGGATGTGAAATATGCACAAAACAATTTGTACAATATGAAGGGTTAAAAAGACATATGATGATGCATACTGGCAAAATACCATTTCGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGTTGGAAAACAATTTGGATGTAAAATATGCACAAAACAGTTTACACAAAGTGCTCACTTAAAAGTTCATTTGAGAtctcacactggtgaaaaaccatttggatGTGAAATATGCACAAAACAGTTTTCAAAACGTGCTCATTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACGTGCTCATTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTCGGATGTGAAATATGCACAAAACAGTTTACACAAAGTGCTCACTTAAAAGTTCATTTGAGAtctcacactggtgaaaaaccatttggatGTGATATATGCGCAAAACAGTTTACACGAAGTGACAACTTAAAAGTTCATATGAAAACGCACTAG
- Protein Sequence
- MILGCKYEDRLTDENNELRHVINNQLNQRTTEGRKVNSVEKSFACQICLRRHLTQQHTREKSVTYEACSDTREKSFGCEVYTRQFTQNANLTPFRCEICTKQFSKPAHLKRHMVVHTGEKPFGCEICTKQFSKPAHLKRHMVVHTGEKPFGCDICTKQFTRSDNLKVHMRTHTRELFGCEICTKQFVQYEGLKRHMMMHTGKIPFRCEICTKQFSKPAHLKRHMVVHTGGKPFGCEICTKQFSKPAHLKRHMVVHTGGKPFGCEICTKQFSKPAHLKRHMVVHTGGKPFGCEICTKQFSKPAHLKRHMVVHTVGKQFGCKICTKQFTQSAHLKVHLRSHTGEKPFGCEICTKQFSKRAHLKRHMVVHTGGKPFGCEICTKQFSKRAHLKRHMVVHTGGKPFGCEICTKQFTQSAHLKVHLRSHTGEKPFGCDICAKQFTRSDNLKVHMKTH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437296;
- 90% Identity
- iTF_00437296;
- 80% Identity
- iTF_00437296;