g97820.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML021138.1:39053-40408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8e-07 0.0002 24.3 1.8 1 23 94 116 94 116 0.97 2 13 7.5e-06 0.002 21.2 1.0 3 23 124 144 122 144 0.97 3 13 1e-07 2.6e-05 27.1 1.2 3 23 152 172 150 172 0.98 4 13 1.4e-05 0.0037 20.3 0.4 3 23 179 199 177 199 0.98 5 13 7.8e-07 0.0002 24.3 1.8 1 23 205 227 205 227 0.97 6 13 7.5e-06 0.002 21.2 1.0 3 23 235 255 233 255 0.97 7 13 7.5e-06 0.002 21.2 1.0 3 23 263 283 261 283 0.97 8 13 7.5e-06 0.002 21.2 1.0 3 23 291 311 289 311 0.97 9 13 5.9e-06 0.0015 21.5 2.7 3 23 319 339 317 339 0.98 10 13 1.6e-05 0.0041 20.2 1.9 3 23 347 367 345 367 0.97 11 13 1.6e-05 0.0041 20.2 1.9 3 23 375 395 373 395 0.97 12 13 5.1e-06 0.0013 21.7 1.9 3 23 403 423 401 423 0.98 13 13 8.2e-07 0.00021 24.2 0.7 3 23 431 451 429 451 0.98
Sequence Information
- Coding Sequence
- ATGATTTTAGGTTGCAAATATGAAGATAGACTAACTGATGAAAACAACGAATTACGTCATGTTATAAATAACCAATTAAACCAACGTACAACTGAGGGTAGGAAAGTGAATTCCGTTGAAAAATCTTTTGCTTGCCAGATTTGTTTAAGAAGACATTTGACACAACAGCATACTAGAGAAAAATCTGTCACATATGAAGCCTGCTCAGATACACGAGAAAAATCATTTGGATGTGAAGTATACACAAGACAGTTTACGCAAAATGCAAACTTAACACCATTTCGTTGTGAAATATGCACAAAACAGTTTTCAAAGCCTGCTCACTTAAAAAGACATATGGtggtgcatactggtgaaaaaccatttggatGTGAAATATGCACAAAACAGTTTTCAAAGCCTGCTCACTTAAAAAGACATATGGtggtgcatactggtgaaaaaccatttggatGTGATATATGCACAAAACAGTTTACACGAAGTGACAACTTAAAAGTTCATATGAGAACGCACACTAGGGAATTATTTGGATGTGAAATATGCACAAAACAATTTGTACAATATGAAGGGTTAAAAAGACATATGATGATGCATACTGGCAAAATACCATTTCGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACCTGCTCACTTAAAAAGACATATGGTGGTGCATACTGTTGGAAAACAATTTGGATGTAAAATATGCACAAAACAGTTTACACAAAGTGCTCACTTAAAAGTTCATTTGAGAtctcacactggtgaaaaaccatttggatGTGAAATATGCACAAAACAGTTTTCAAAACGTGCTCATTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAAACGTGCTCATTTAAAAAGACATATGGTGGTGCATACTGGTGGAAAACCATTCGGATGTGAAATATGCACAAAACAGTTTACACAAAGTGCTCACTTAAAAGTTCATTTGAGAtctcacactggtgaaaaaccatttggatGTGATATATGCGCAAAACAGTTTACACGAAGTGACAACTTAAAAGTTCATATGAAAACGCACTAG
- Protein Sequence
- MILGCKYEDRLTDENNELRHVINNQLNQRTTEGRKVNSVEKSFACQICLRRHLTQQHTREKSVTYEACSDTREKSFGCEVYTRQFTQNANLTPFRCEICTKQFSKPAHLKRHMVVHTGEKPFGCEICTKQFSKPAHLKRHMVVHTGEKPFGCDICTKQFTRSDNLKVHMRTHTRELFGCEICTKQFVQYEGLKRHMMMHTGKIPFRCEICTKQFSKPAHLKRHMVVHTGGKPFGCEICTKQFSKPAHLKRHMVVHTGGKPFGCEICTKQFSKPAHLKRHMVVHTGGKPFGCEICTKQFSKPAHLKRHMVVHTVGKQFGCKICTKQFTQSAHLKVHLRSHTGEKPFGCEICTKQFSKRAHLKRHMVVHTGGKPFGCEICTKQFSKRAHLKRHMVVHTGGKPFGCEICTKQFTQSAHLKVHLRSHTGEKPFGCDICAKQFTRSDNLKVHMKTH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437760;
- 90% Identity
- iTF_00437760;
- 80% Identity
- iTF_00437760;