g95158.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML020439.1:73909-75619[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.052 3.1e+02 4.3 0.1 26 48 65 87 57 91 0.88 2 12 0.0091 54 6.7 0.4 21 48 90 117 85 121 0.88 3 12 0.0095 56 6.7 0.1 22 49 121 148 118 153 0.90 4 12 3.6 2.2e+04 -1.6 0.0 22 30 188 196 172 213 0.64 5 12 0.076 4.5e+02 3.8 0.3 18 48 269 299 263 304 0.84 6 12 0.24 1.4e+03 2.2 0.0 18 45 298 325 295 331 0.83 7 12 0.44 2.6e+03 1.3 0.1 24 48 332 356 327 362 0.84 8 12 1.6 9.8e+03 -0.5 0.1 22 47 360 385 352 390 0.77 9 12 0.0001 0.62 12.9 0.0 21 52 387 418 380 419 0.88 10 12 0.79 4.7e+03 0.5 0.1 21 44 415 438 411 441 0.80 11 12 0.0044 26 7.7 0.0 21 48 443 470 437 474 0.85 12 12 0.0038 23 7.9 0.2 21 46 471 496 467 501 0.90
Sequence Information
- Coding Sequence
- ATGATTTTAGGTTTCAAATGCGAAGATACACTAACTGACGAAAATAACGAATTAAAAAATCATCTTATAAATAACCAATCGAACCAATGTACAACTGACGTTAGGAAAGTGAATATTGTTGAAAAGCCTTTTGCGTCCGAAAAGAAAAATTTTAGAACACATTTGatagttcacactggagaaaaattaTTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGAAAGTGAATATTGTTGAAAAGCCTTTTGCGTCCGAAAAGAAAAATTTTAGAACACATTTGATAGTTCACACTGGAAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAGTGAGTTAAAAATACATATGagaattcacactggtgaaaaactaTTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAGTGAGTTAAAAATACATATGagaattcacactggtgaaaaactaTTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGGGATCACCTAAAAGATCATATGTTGAGAAGGCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGGGATCACCTAAAAGATCATATGTTGAGAAGGCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTTCAAATAAAGAGTTAAAATTGCATATGAcggtgcatactggtgaaaaacgaTTTAGATGTGAAATATGCACAAAACAGTTTTCACAAAGTACGATCTTAAAAGTTCATATAATAAGAAAACACAACATTGGTCAAAAACCGTTTCGATGTGAAATGTGTGCAAAACAGTTTGTAACACATATTGACTTAAAAAGGCACATGGcggtgcatactggtgaaaaaccattttcgtgtgaaatttgcaccaaacattttttacaaagttgggatttaaaaagacatttgagaattcacactggtgaaaaaccatttgaatgtgaaatttgcaccaaacaggtTTCAACGAAACAGGTTTTAAAATTGCATATGAgtgtgcatactggtgaaaaaccattcgCGTGTGAAATATGCACAAAACAGTTTGTAACAAGTCGAGCGTTAAAAATGCATATGACAgtacatactggtgaaaaaccttatgcGTGTGAAATATGTACAAAACAGTTTGCAAGAAGTACTACCTTAAAAAGACATATGAGGGTACATACTGAACCAAAAACCATTTGA
- Protein Sequence
- MILGFKCEDTLTDENNELKNHLINNQSNQCTTDVRKVNIVEKPFASEKKNFRTHLIVHTGEKLFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQKVNIVEKPFASEKKNFRTHLIVHTGKKPFGCEICTKQFVTHSELKIHMRIHTGEKLFGCEICTKQFVTHSELKIHMRIHTGEKLFGCEICTKQFSRRDHLKDHMLRRHTDEKPFGCEICTKQFSRRDHLKDHMLRRHTDEKPFGCEICTKQFVSNKELKLHMTVHTGEKRFRCEICTKQFSQSTILKVHIIRKHNIGQKPFRCEMCAKQFVTHIDLKRHMAVHTGEKPFSCEICTKHFLQSWDLKRHLRIHTGEKPFECEICTKQVSTKQVLKLHMSVHTGEKPFACEICTKQFVTSRALKMHMTVHTGEKPYACEICTKQFARSTTLKRHMRVHTEPKTI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437221;
- 90% Identity
- iTF_00437221;
- 80% Identity
- iTF_00437221;