g95158.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML020439.1:73909-75619[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00042 0.81 12.5 2.2 18 44 65 88 54 88 0.88 2 15 0.0002 0.38 13.5 0.4 19 44 96 118 92 118 0.94 3 15 0.0002 0.38 13.5 0.4 19 44 126 148 122 148 0.94 4 15 0.57 1.1e+03 2.4 0.0 19 39 156 182 152 189 0.84 5 15 0.57 1.1e+03 2.4 0.6 19 39 193 210 183 214 0.82 6 15 0.23 4.5e+02 3.7 1.4 4 39 207 238 204 241 0.75 7 15 0.0049 9.6 9.0 3.0 4 43 235 270 232 271 0.81 8 15 0.012 24 7.7 5.4 3 43 262 299 260 300 0.85 9 15 0.55 1.1e+03 2.5 3.0 3 29 291 317 289 328 0.76 10 15 0.0003 0.58 12.9 2.8 13 44 329 357 319 357 0.87 11 15 1.4 2.7e+03 1.2 0.4 18 38 364 381 360 386 0.76 12 15 4.5 8.8e+03 -0.5 2.1 17 40 391 411 375 414 0.77 13 15 0.088 1.7e+02 5.0 0.7 4 29 407 431 404 442 0.80 14 15 0.52 1e+03 2.5 0.5 18 39 448 466 435 470 0.77 15 15 0.00021 0.41 13.4 0.8 18 40 476 495 467 498 0.88
Sequence Information
- Coding Sequence
- ATGATTTTAGGTTTCAAATGCGAAGATACACTAACTGACGAAAATAACGAATTAAAAAATCATCTTATAAATAACCAATCGAACCAATGTACAACTGACGTTAGGAAAGTGAATATTGTTGAAAAGCCTTTTGCGTCCGAAAAGAAAAATTTTAGAACACATTTGatagttcacactggagaaaaattaTTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGAAAGTGAATATTGTTGAAAAGCCTTTTGCGTCCGAAAAGAAAAATTTTAGAACACATTTGATAGTTCACACTGGAAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAGTGAGTTAAAAATACATATGagaattcacactggtgaaaaactaTTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAGTGAGTTAAAAATACATATGagaattcacactggtgaaaaactaTTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGGGATCACCTAAAAGATCATATGTTGAGAAGGCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGGGATCACCTAAAAGATCATATGTTGAGAAGGCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTTCAAATAAAGAGTTAAAATTGCATATGAcggtgcatactggtgaaaaacgaTTTAGATGTGAAATATGCACAAAACAGTTTTCACAAAGTACGATCTTAAAAGTTCATATAATAAGAAAACACAACATTGGTCAAAAACCGTTTCGATGTGAAATGTGTGCAAAACAGTTTGTAACACATATTGACTTAAAAAGGCACATGGcggtgcatactggtgaaaaaccattttcgtgtgaaatttgcaccaaacattttttacaaagttgggatttaaaaagacatttgagaattcacactggtgaaaaaccatttgaatgtgaaatttgcaccaaacaggtTTCAACGAAACAGGTTTTAAAATTGCATATGAgtgtgcatactggtgaaaaaccattcgCGTGTGAAATATGCACAAAACAGTTTGTAACAAGTCGAGCGTTAAAAATGCATATGACAgtacatactggtgaaaaaccttatgcGTGTGAAATATGTACAAAACAGTTTGCAAGAAGTACTACCTTAAAAAGACATATGAGGGTACATACTGAACCAAAAACCATTTGA
- Protein Sequence
- MILGFKCEDTLTDENNELKNHLINNQSNQCTTDVRKVNIVEKPFASEKKNFRTHLIVHTGEKLFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQKVNIVEKPFASEKKNFRTHLIVHTGKKPFGCEICTKQFVTHSELKIHMRIHTGEKLFGCEICTKQFVTHSELKIHMRIHTGEKLFGCEICTKQFSRRDHLKDHMLRRHTDEKPFGCEICTKQFSRRDHLKDHMLRRHTDEKPFGCEICTKQFVSNKELKLHMTVHTGEKRFRCEICTKQFSQSTILKVHIIRKHNIGQKPFRCEMCAKQFVTHIDLKRHMAVHTGEKPFSCEICTKHFLQSWDLKRHLRIHTGEKPFECEICTKQVSTKQVLKLHMSVHTGEKPFACEICTKQFVTSRALKMHMTVHTGEKPYACEICTKQFARSTTLKRHMRVHTEPKTI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437301; iTF_00437752;
- 90% Identity
- iTF_00437301; iTF_00437752;
- 80% Identity
- iTF_00437301; iTF_00437752;