Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML016034.1:286119-287753[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.7 1e+04 -0.6 0.1 22 45 35 58 33 65 0.70

2 14 0.02 1.2e+02 5.6 0.0 22 47 63 88 55 93 0.85

3 14 0.017 1e+02 5.8 0.0 22 52 91 121 88 123 0.87

4 14 1.6 9.3e+03 -0.4 0.0 22 45 119 142 116 149 0.72

5 14 0.33 2e+03 1.7 0.0 22 46 147 171 142 174 0.87

6 14 0.0076 45 7.0 0.0 22 52 175 205 172 207 0.88

7 14 0.15 9e+02 2.8 0.0 22 49 203 230 199 236 0.88

8 14 0.12 7.3e+02 3.1 0.3 12 47 222 257 217 262 0.81

9 14 0.0026 16 8.4 0.0 22 52 260 290 256 291 0.87

10 14 0.067 4e+02 3.9 0.1 21 45 287 311 283 317 0.87

11 14 0.044 2.6e+02 4.5 0.1 20 45 342 367 325 374 0.85

12 14 0.044 2.6e+02 4.5 0.1 20 45 398 423 381 430 0.85

13 14 0.044 2.6e+02 4.5 0.1 20 45 454 479 437 486 0.85

14 14 0.2 1.2e+03 2.4 0.1 20 43 510 533 493 539 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.7	1e+04	-0.6	0.1	22	45	35	58	33	65	0.70
2	14	0.02	1.2e+02	5.6	0.0	22	47	63	88	55	93	0.85
3	14	0.017	1e+02	5.8	0.0	22	52	91	121	88	123	0.87
4	14	1.6	9.3e+03	-0.4	0.0	22	45	119	142	116	149	0.72
5	14	0.33	2e+03	1.7	0.0	22	46	147	171	142	174	0.87
6	14	0.0076	45	7.0	0.0	22	52	175	205	172	207	0.88
7	14	0.15	9e+02	2.8	0.0	22	49	203	230	199	236	0.88
8	14	0.12	7.3e+02	3.1	0.3	12	47	222	257	217	262	0.81
9	14	0.0026	16	8.4	0.0	22	52	260	290	256	291	0.87
10	14	0.067	4e+02	3.9	0.1	21	45	287	311	283	317	0.87
11	14	0.044	2.6e+02	4.5	0.1	20	45	342	367	325	374	0.85
12	14	0.044	2.6e+02	4.5	0.1	20	45	398	423	381	430	0.85
13	14	0.044	2.6e+02	4.5	0.1	20	45	454	479	437	486	0.85
14	14	0.2	1.2e+03	2.4	0.1	20	43	510	533	493	539	0.82

Sequence Information

Coding Sequence: ATGGGACTACACACTGAAGATAAGCCTTTTGCTGGTGAAGTTCGTGCCAACAAGTTTTCACAAACTTCCCATTTAAATGAAGATATGACAATATACACTGGGGATAAACCTTTTGCATGTGAAATTTGCTCCAAAAGTTTTTCAAAAAGATCCAGGTTAGCAGAACATATGAGAGTACATACTGGCGataaaccatttaaatgtgaaatttgctccAAAAGTTGGTCAGCAAAGAGCAATTTAAAGAGACATATGAAAATATGTACTGGAGATAAGCCTTTTGCGTGTGAAATTTGTGCCAAAAAGTTTTCACAAAGTTCCCATTTAAATGAACATATGGCAATACATACTGGCGATAAACCTTTTGTATGTGGCATTTGTTCTAAGAGTCTTTCAAAAAGATCCAGGTTAGCAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATGGTCAGCAAAGAGCACTTTGAAAAGACATATGAAAATACATACTGAAGATAACCCTTTTGCGTGTGAAATTTGTGCCAAAAAGTTTTCACAAAGTTCCCATTTAAAAGATCATATGAAAATCCACACTGGCGATAAACCTTTTGTATGTGACATTTGCTCCAAGAGATTTTCACAAAGGTCCAGTTTAACAGAACATATGAGAGTAGTACATATTGGAGATAAACCTTTTGCATGTGAAATTTGCTGCAAAAGTTTTTCACAAAGATCCACGTTAGCAGAACATATTAGAGTACATACTGGTGATAAACCTTTTGAATGTAAAATTTGCTTTAAAAGGTTTTCACAAGGATCCGGGTTAAGAAAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCTCCAAAAGTTTTTCACAAGAATCCAGTTTAGCAGAACATAATATGACAGTACATACATATGtatatatagtttag
Protein Sequence: MGLHTEDKPFAGEVRANKFSQTSHLNEDMTIYTGDKPFACEICSKSFSKRSRLAEHMRVHTGDKPFKCEICSKSWSAKSNLKRHMKICTGDKPFACEICAKKFSQSSHLNEHMAIHTGDKPFVCGICSKSLSKRSRLADHMRVHTGDKPFACEICSKKWSAKSTLKRHMKIHTEDNPFACEICAKKFSQSSHLKDHMKIHTGDKPFVCDICSKRFSQRSSLTEHMRVVHIGDKPFACEICCKSFSQRSTLAEHIRVHTGDKPFECKICFKRFSQGSGLRKHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICSKSFSQESSLAEHNMTVHTYVYIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437276;
90% Identity: iTF_00437276;
80% Identity: iTF_00437276;