Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML016034.1:286119-287753[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.8e-06 0.00047 23.1 0.6 1 23 38 60 38 60 0.97

2 18 8.9e-05 0.023 17.8 0.4 1 21 66 86 66 87 0.96

3 18 1.6e-06 0.00042 23.3 0.6 1 23 94 116 94 116 0.97

4 18 5e-05 0.013 18.6 0.3 1 23 122 144 122 144 0.98

5 18 0.00035 0.091 15.9 0.7 1 23 150 172 150 172 0.97

6 18 6.8e-07 0.00018 24.5 1.8 1 23 178 200 178 200 0.97

7 18 6.8e-08 1.8e-05 27.6 0.6 1 23 206 229 206 229 0.97

8 18 2.8e-05 0.0072 19.4 1.2 1 23 235 257 235 257 0.97

9 18 7e-07 0.00018 24.4 1.5 1 23 263 285 263 285 0.98

10 18 4.4e-06 0.0012 21.9 1.8 1 23 291 313 291 313 0.97

11 18 4.7e-06 0.0012 21.8 1.2 1 23 319 341 319 341 0.97

12 18 4.4e-06 0.0012 21.9 1.8 1 23 347 369 347 369 0.97

13 18 4.7e-06 0.0012 21.8 1.2 1 23 375 397 375 397 0.97

14 18 4.4e-06 0.0012 21.9 1.8 1 23 403 425 403 425 0.97

15 18 4.7e-06 0.0012 21.8 1.2 1 23 431 453 431 453 0.97

16 18 4.4e-06 0.0012 21.9 1.8 1 23 459 481 459 481 0.97

17 18 4.7e-06 0.0012 21.8 1.2 1 23 487 509 487 509 0.97

18 18 1.6e-05 0.0041 20.1 0.2 1 23 515 538 515 538 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.8e-06	0.00047	23.1	0.6	1	23	38	60	38	60	0.97
2	18	8.9e-05	0.023	17.8	0.4	1	21	66	86	66	87	0.96
3	18	1.6e-06	0.00042	23.3	0.6	1	23	94	116	94	116	0.97
4	18	5e-05	0.013	18.6	0.3	1	23	122	144	122	144	0.98
5	18	0.00035	0.091	15.9	0.7	1	23	150	172	150	172	0.97
6	18	6.8e-07	0.00018	24.5	1.8	1	23	178	200	178	200	0.97
7	18	6.8e-08	1.8e-05	27.6	0.6	1	23	206	229	206	229	0.97
8	18	2.8e-05	0.0072	19.4	1.2	1	23	235	257	235	257	0.97
9	18	7e-07	0.00018	24.4	1.5	1	23	263	285	263	285	0.98
10	18	4.4e-06	0.0012	21.9	1.8	1	23	291	313	291	313	0.97
11	18	4.7e-06	0.0012	21.8	1.2	1	23	319	341	319	341	0.97
12	18	4.4e-06	0.0012	21.9	1.8	1	23	347	369	347	369	0.97
13	18	4.7e-06	0.0012	21.8	1.2	1	23	375	397	375	397	0.97
14	18	4.4e-06	0.0012	21.9	1.8	1	23	403	425	403	425	0.97
15	18	4.7e-06	0.0012	21.8	1.2	1	23	431	453	431	453	0.97
16	18	4.4e-06	0.0012	21.9	1.8	1	23	459	481	459	481	0.97
17	18	4.7e-06	0.0012	21.8	1.2	1	23	487	509	487	509	0.97
18	18	1.6e-05	0.0041	20.1	0.2	1	23	515	538	515	538	0.96

Sequence Information

Coding Sequence: ATGGGACTACACACTGAAGATAAGCCTTTTGCTGGTGAAGTTCGTGCCAACAAGTTTTCACAAACTTCCCATTTAAATGAAGATATGACAATATACACTGGGGATAAACCTTTTGCATGTGAAATTTGCTCCAAAAGTTTTTCAAAAAGATCCAGGTTAGCAGAACATATGAGAGTACATACTGGCGataaaccatttaaatgtgaaatttgctccAAAAGTTGGTCAGCAAAGAGCAATTTAAAGAGACATATGAAAATATGTACTGGAGATAAGCCTTTTGCGTGTGAAATTTGTGCCAAAAAGTTTTCACAAAGTTCCCATTTAAATGAACATATGGCAATACATACTGGCGATAAACCTTTTGTATGTGGCATTTGTTCTAAGAGTCTTTCAAAAAGATCCAGGTTAGCAGACCATATGAGAGTACACACTGGGGATAAACCATTTGCATGTGAAATTTGCTCCAAAAAATGGTCAGCAAAGAGCACTTTGAAAAGACATATGAAAATACATACTGAAGATAACCCTTTTGCGTGTGAAATTTGTGCCAAAAAGTTTTCACAAAGTTCCCATTTAAAAGATCATATGAAAATCCACACTGGCGATAAACCTTTTGTATGTGACATTTGCTCCAAGAGATTTTCACAAAGGTCCAGTTTAACAGAACATATGAGAGTAGTACATATTGGAGATAAACCTTTTGCATGTGAAATTTGCTGCAAAAGTTTTTCACAAAGATCCACGTTAGCAGAACATATTAGAGTACATACTGGTGATAAACCTTTTGAATGTAAAATTTGCTTTAAAAGGTTTTCACAAGGATCCGGGTTAAGAAAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCCTTAAGTGTTTTTCACAAAGATCCAGTTTAACAGACCATATGACAGTACACACTGGGGATAAACGTTTTGCATGTGAAACATGCTCCAAAAGATTTTCACAAAGAACCGGGTTATCACAACATATGAGAGTACATACTAGCGATAAACCTTTTGCTTGTGAAATTTGCTCCAAAAGTTTTTCACAAGAATCCAGTTTAGCAGAACATAATATGACAGTACATACATATGtatatatagtttag
Protein Sequence: MGLHTEDKPFAGEVRANKFSQTSHLNEDMTIYTGDKPFACEICSKSFSKRSRLAEHMRVHTGDKPFKCEICSKSWSAKSNLKRHMKICTGDKPFACEICAKKFSQSSHLNEHMAIHTGDKPFVCGICSKSLSKRSRLADHMRVHTGDKPFACEICSKKWSAKSTLKRHMKIHTEDNPFACEICAKKFSQSSHLKDHMKIHTGDKPFVCDICSKRFSQRSSLTEHMRVVHIGDKPFACEICCKSFSQRSTLAEHIRVHTGDKPFECKICFKRFSQGSGLRKHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICLKCFSQRSSLTDHMTVHTGDKRFACETCSKRFSQRTGLSQHMRVHTSDKPFACEICSKSFSQESSLAEHNMTVHTYVYIV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437750;
90% Identity: iTF_00437750;
80% Identity: iTF_00437750;