Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML019276.1:25360-40954[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.6 9.3e+03 -0.4 0.0 17 30 137 150 131 161 0.81

2 14 0.075 4.5e+02 3.8 0.0 25 50 198 223 193 225 0.82

3 14 0.001 6.1 9.8 0.0 22 45 223 246 220 255 0.88

4 14 2.7 1.6e+04 -1.2 0.0 25 44 254 273 247 280 0.83

5 14 0.034 2e+02 4.9 0.1 23 52 308 337 302 339 0.87

6 14 1.2 6.9e+03 -0.0 0.0 22 45 335 358 330 361 0.83

7 14 0.0046 27 7.7 0.0 21 50 362 391 348 393 0.83

8 14 0.00057 3.4 10.6 0.0 22 52 391 421 388 423 0.89

9 14 0.68 4.1e+03 0.7 0.0 22 48 419 445 417 450 0.82

10 14 0.32 1.9e+03 1.7 0.1 26 52 479 505 466 507 0.84

11 14 0.63 3.7e+03 0.8 0.1 23 46 504 527 500 529 0.87

12 14 0.001 6.1 9.8 0.1 19 48 528 557 512 561 0.81

13 14 0.0001 0.61 13.0 0.1 22 51 559 588 554 589 0.86

14 14 0.0049 29 7.6 0.0 21 46 586 611 583 614 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.6	9.3e+03	-0.4	0.0	17	30	137	150	131	161	0.81
2	14	0.075	4.5e+02	3.8	0.0	25	50	198	223	193	225	0.82
3	14	0.001	6.1	9.8	0.0	22	45	223	246	220	255	0.88
4	14	2.7	1.6e+04	-1.2	0.0	25	44	254	273	247	280	0.83
5	14	0.034	2e+02	4.9	0.1	23	52	308	337	302	339	0.87
6	14	1.2	6.9e+03	-0.0	0.0	22	45	335	358	330	361	0.83
7	14	0.0046	27	7.7	0.0	21	50	362	391	348	393	0.83
8	14	0.00057	3.4	10.6	0.0	22	52	391	421	388	423	0.89
9	14	0.68	4.1e+03	0.7	0.0	22	48	419	445	417	450	0.82
10	14	0.32	1.9e+03	1.7	0.1	26	52	479	505	466	507	0.84
11	14	0.63	3.7e+03	0.8	0.1	23	46	504	527	500	529	0.87
12	14	0.001	6.1	9.8	0.1	19	48	528	557	512	561	0.81
13	14	0.0001	0.61	13.0	0.1	22	51	559	588	554	589	0.86
14	14	0.0049	29	7.6	0.0	21	46	586	611	583	614	0.90

Sequence Information

Coding Sequence: atggaAGTAAAACAAGAAGTTAATGAACGCACATGTAAAGAAGAAGTAGATAATGAGGGGGTTGATGATGTTTTTGATACCTTTAAAATTGAAATTAAGGAGGAGCCCAAGAAGGAAAGTACAAGTGATGAATTCGATTATTTGGTTTTAAACGAGGACCCTATAAAGACAGAAAAATATGAAGACAAACTCATATTATTTGAACAAAAAGAAACAAATGAAAAAAGTTTTGCCCACCAAGATATACAAACTGATGCAAGCAAATTATTTAAAGACCTTGATATAATTAACGCCGATTTGGACCAATGTCTAACTGCCTCGACGAATGTGAACACTGAGAAAAATTATTTTACCACTGAAATTTGGTATAAACAATTTTCAACAAAGGGCCATGTAGAATCAGATAACAGTGTTCAAACTGTAGAACAGGTTTTTACGTGTACAGTATGCGCCAAAAACTTTTCAAACATTTCTGATCTAAAATCAAGTGCGGAGACTACCGCTGCAGGAAAAAAACTTATAACGTGTGAAGTTTGTTCTAAAGAGTTTAATACAGCAGGTGTTTTAACAGTACCTATTGCAGAAAATACTTTTCCATGTCAAATTTGTTCCAAGAGTTTTTCACAAAGGTACAATTTAAAAACACATATGAAAATACACACTGGAGATAAGCCTTTTGCGTGTGATATTTGCTTCAAGATGTTTTCGCTAACATCCAATTTAAAAAGACACATAAAAACACATACTGCAGATAAATCTTTTGCATGTGAAATTTGTGACAAGAAGTTTTCACGAAGTTCTCATTTAAAAGAGCATATGATAATACATACTGGAGATAAGGCTTTTGCGTGTAAAGTTTGTGCCAAAAAGTTTTCACGAAGTTGCATTTTAAAAGAACATATGAAAGTACACACTGGGCATAAGCCTTTTGAGTGTGAAATTTGCTTCAAAAGGTTTTCACAAAAATGCCATTTAGAAAAACATATGAAAGTTCACACTGGCGATAAGCCTTTTGTATGTGCAATTTGTGACAAGAGTTTTCCACAAAGATCCACTTTAACAGAACATATGAGagtacatactggagaaaagccttatgcGTGTGAAATATGCTCCACAATGTTTTCGGTAAAATCCAATTTAAAAACACATATGAAAATACACACTGGAGATAAACCTTTTGCATGTGAAATTTGTGCCAAAGTGTTTTCGCTaaaatctaatttaaaaaaacatctgaaAATACACAATGGGGATAAACCTTTTGTATGTGAAATTTGTGCTAAAAAGTTTGCACGAAGTTCTTATTTAAACGATCATATGAGAATACATACTGGAGATAAACCATTTGCATGTGAAACTTGTGCCAAGAAGTTTTCACATAGATCCAGTGTAAAAGAACATATGATGATACACAGTGGACATAAGGCTTTTgcgtgtaaaatttgttttaagagtTTTTCACAAAGATCCTGTTTAACAAAACATACGAAAGTACACACTGGACCTAAGCCCTTTGTGTGTGAAATTTGCCTCAAAAGATGTTCACAAAAAGTCCATTTGGAAAAACATATGAAAATACACACTGGAGAGAAACCCTTTACTTGTGAAGTTTGTGCCAAGAAGTTTTCGCAAAGGGCCAATTTAAAAGAACATATGAGAGTACACACTGGCGACAAACCTTTTGCATGTGAAATATGCTGCAAAATGTTTTCGCAAAAACGTAATTTAAAAACACATATGAAAATGCACACTGGAGAGAAACCTTTTACATGTGAAATTTGTGCCAAAAAGTTTTCACGAAGTTCCAATTTCAAAGATCATATGAGAATACACACGCTGATCAtatga
Protein Sequence: MEVKQEVNERTCKEEVDNEGVDDVFDTFKIEIKEEPKKESTSDEFDYLVLNEDPIKTEKYEDKLILFEQKETNEKSFAHQDIQTDASKLFKDLDIINADLDQCLTASTNVNTEKNYFTTEIWYKQFSTKGHVESDNSVQTVEQVFTCTVCAKNFSNISDLKSSAETTAAGKKLITCEVCSKEFNTAGVLTVPIAENTFPCQICSKSFSQRYNLKTHMKIHTGDKPFACDICFKMFSLTSNLKRHIKTHTADKSFACEICDKKFSRSSHLKEHMIIHTGDKAFACKVCAKKFSRSCILKEHMKVHTGHKPFECEICFKRFSQKCHLEKHMKVHTGDKPFVCAICDKSFPQRSTLTEHMRVHTGEKPYACEICSTMFSVKSNLKTHMKIHTGDKPFACEICAKVFSLKSNLKKHLKIHNGDKPFVCEICAKKFARSSYLNDHMRIHTGDKPFACETCAKKFSHRSSVKEHMMIHSGHKAFACKICFKSFSQRSCLTKHTKVHTGPKPFVCEICLKRCSQKVHLEKHMKIHTGEKPFTCEVCAKKFSQRANLKEHMRVHTGDKPFACEICCKMFSQKRNLKTHMKMHTGEKPFTCEICAKKFSRSSNFKDHMRIHTLII*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437279;
90% Identity: iTF_00437279;
80% Identity: iTF_00437279;