Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML019276.1:25360-40954[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.041 11 9.4 0.3 1 17 145 161 145 162 0.94

2 17 0.58 1.5e+02 5.8 0.0 2 16 175 189 174 191 0.84

3 17 6.9e-08 1.8e-05 27.6 1.9 1 23 198 220 198 220 0.98

4 17 2.2e-06 0.00058 22.8 1.5 1 23 226 248 226 248 0.97

5 17 6.7e-08 1.7e-05 27.6 1.4 1 23 254 276 254 276 0.97

6 17 0.0023 0.6 13.3 2.5 1 23 282 304 282 304 0.97

7 17 7.4e-06 0.0019 21.2 6.4 1 23 310 332 310 332 0.98

8 17 6.2e-08 1.6e-05 27.7 0.2 1 23 338 360 338 360 0.98

9 17 7.7e-07 0.0002 24.3 0.6 1 23 366 388 366 388 0.98

10 17 1.5e-06 0.00038 23.4 0.5 1 23 394 416 394 416 0.97

11 17 4.9e-07 0.00013 24.9 0.4 1 23 422 444 422 444 0.98

12 17 0.00011 0.028 17.5 1.8 1 23 450 472 450 472 0.97

13 17 1.8e-05 0.0047 20.0 5.2 1 23 478 500 478 500 0.97

14 17 3e-05 0.0078 19.3 4.0 1 23 506 528 506 528 0.98

15 17 3.1e-07 8.2e-05 25.5 0.7 1 23 534 556 534 556 0.98

16 17 5e-05 0.013 18.6 4.3 1 23 562 584 562 584 0.97

17 17 1.8e-07 4.8e-05 26.2 1.8 1 23 590 612 590 612 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.041	11	9.4	0.3	1	17	145	161	145	162	0.94
2	17	0.58	1.5e+02	5.8	0.0	2	16	175	189	174	191	0.84
3	17	6.9e-08	1.8e-05	27.6	1.9	1	23	198	220	198	220	0.98
4	17	2.2e-06	0.00058	22.8	1.5	1	23	226	248	226	248	0.97
5	17	6.7e-08	1.7e-05	27.6	1.4	1	23	254	276	254	276	0.97
6	17	0.0023	0.6	13.3	2.5	1	23	282	304	282	304	0.97
7	17	7.4e-06	0.0019	21.2	6.4	1	23	310	332	310	332	0.98
8	17	6.2e-08	1.6e-05	27.7	0.2	1	23	338	360	338	360	0.98
9	17	7.7e-07	0.0002	24.3	0.6	1	23	366	388	366	388	0.98
10	17	1.5e-06	0.00038	23.4	0.5	1	23	394	416	394	416	0.97
11	17	4.9e-07	0.00013	24.9	0.4	1	23	422	444	422	444	0.98
12	17	0.00011	0.028	17.5	1.8	1	23	450	472	450	472	0.97
13	17	1.8e-05	0.0047	20.0	5.2	1	23	478	500	478	500	0.97
14	17	3e-05	0.0078	19.3	4.0	1	23	506	528	506	528	0.98
15	17	3.1e-07	8.2e-05	25.5	0.7	1	23	534	556	534	556	0.98
16	17	5e-05	0.013	18.6	4.3	1	23	562	584	562	584	0.97
17	17	1.8e-07	4.8e-05	26.2	1.8	1	23	590	612	590	612	0.98

Sequence Information

Coding Sequence: atggaAGTAAAACAAGAAGTTAATGAACGCACATGTAAAGAAGAAGTAGATAATGAGGGGGTTGATGATGTTTTTGATACCTTTAAAATTGAAATTAAGGAGGAGCCCAAGAAGGAAAGTACAAGTGATGAATTCGATTATTTGGTTTTAAACGAGGACCCTATAAAGACAGAAAAATATGAAGACAAACTCATATTATTTGAACAAAAAGAAACAAATGAAAAAAGTTTTGCCCACCAAGATATACAAACTGATGCAAGCAAATTATTTAAAGACCTTGATATAATTAACGCCGATTTGGACCAATGTCTAACTGCCTCGACGAATGTGAACACTGAGAAAAATTATTTTACCACTGAAATTTGGTATAAACAATTTTCAACAAAGGGCCATGTAGAATCAGATAACAGTGTTCAAACTGTAGAACAGGTTTTTACGTGTACAGTATGCGCCAAAAACTTTTCAAACATTTCTGATCTAAAATCAAGTGCGGAGACTACCGCTGCAGGAAAAAAACTTATAACGTGTGAAGTTTGTTCTAAAGAGTTTAATACAGCAGGTGTTTTAACAGTACCTATTGCAGAAAATACTTTTCCATGTCAAATTTGTTCCAAGAGTTTTTCACAAAGGTACAATTTAAAAACACATATGAAAATACACACTGGAGATAAGCCTTTTGCGTGTGATATTTGCTTCAAGATGTTTTCGCTAACATCCAATTTAAAAAGACACATAAAAACACATACTGCAGATAAATCTTTTGCATGTGAAATTTGTGACAAGAAGTTTTCACGAAGTTCTCATTTAAAAGAGCATATGATAATACATACTGGAGATAAGGCTTTTGCGTGTAAAGTTTGTGCCAAAAAGTTTTCACGAAGTTGCATTTTAAAAGAACATATGAAAGTACACACTGGGCATAAGCCTTTTGAGTGTGAAATTTGCTTCAAAAGGTTTTCACAAAAATGCCATTTAGAAAAACATATGAAAGTTCACACTGGCGATAAGCCTTTTGTATGTGCAATTTGTGACAAGAGTTTTCCACAAAGATCCACTTTAACAGAACATATGAGagtacatactggagaaaagccttatgcGTGTGAAATATGCTCCACAATGTTTTCGGTAAAATCCAATTTAAAAACACATATGAAAATACACACTGGAGATAAACCTTTTGCATGTGAAATTTGTGCCAAAGTGTTTTCGCTaaaatctaatttaaaaaaacatctgaaAATACACAATGGGGATAAACCTTTTGTATGTGAAATTTGTGCTAAAAAGTTTGCACGAAGTTCTTATTTAAACGATCATATGAGAATACATACTGGAGATAAACCATTTGCATGTGAAACTTGTGCCAAGAAGTTTTCACATAGATCCAGTGTAAAAGAACATATGATGATACACAGTGGACATAAGGCTTTTgcgtgtaaaatttgttttaagagtTTTTCACAAAGATCCTGTTTAACAAAACATACGAAAGTACACACTGGACCTAAGCCCTTTGTGTGTGAAATTTGCCTCAAAAGATGTTCACAAAAAGTCCATTTGGAAAAACATATGAAAATACACACTGGAGAGAAACCCTTTACTTGTGAAGTTTGTGCCAAGAAGTTTTCGCAAAGGGCCAATTTAAAAGAACATATGAGAGTACACACTGGCGACAAACCTTTTGCATGTGAAATATGCTGCAAAATGTTTTCGCAAAAACGTAATTTAAAAACACATATGAAAATGCACACTGGAGAGAAACCTTTTACATGTGAAATTTGTGCCAAAAAGTTTTCACGAAGTTCCAATTTCAAAGATCATATGAGAATACACACGCTGATCAtatga
Protein Sequence: MEVKQEVNERTCKEEVDNEGVDDVFDTFKIEIKEEPKKESTSDEFDYLVLNEDPIKTEKYEDKLILFEQKETNEKSFAHQDIQTDASKLFKDLDIINADLDQCLTASTNVNTEKNYFTTEIWYKQFSTKGHVESDNSVQTVEQVFTCTVCAKNFSNISDLKSSAETTAAGKKLITCEVCSKEFNTAGVLTVPIAENTFPCQICSKSFSQRYNLKTHMKIHTGDKPFACDICFKMFSLTSNLKRHIKTHTADKSFACEICDKKFSRSSHLKEHMIIHTGDKAFACKVCAKKFSRSCILKEHMKVHTGHKPFECEICFKRFSQKCHLEKHMKVHTGDKPFVCAICDKSFPQRSTLTEHMRVHTGEKPYACEICSTMFSVKSNLKTHMKIHTGDKPFACEICAKVFSLKSNLKKHLKIHNGDKPFVCEICAKKFARSSYLNDHMRIHTGDKPFACETCAKKFSHRSSVKEHMMIHSGHKAFACKICFKSFSQRSCLTKHTKVHTGPKPFVCEICLKRCSQKVHLEKHMKIHTGEKPFTCEVCAKKFSQRANLKEHMRVHTGDKPFACEICCKMFSQKRNLKTHMKMHTGEKPFTCEICAKKFSRSSNFKDHMRIHTLII*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00437744;
90% Identity: iTF_00437744;
80% Identity: iTF_00437744;