g95158.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML020439.1:73909-75619[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4e-06 0.001 22.0 0.8 3 23 66 87 64 87 0.97 2 14 4e-06 0.001 22.0 0.8 3 23 96 117 94 117 0.97 3 14 4e-06 0.001 22.0 0.8 3 23 126 147 124 147 0.97 4 14 4.4e-06 0.0011 21.9 1.2 3 23 193 213 191 213 0.98 5 14 4.4e-06 0.0011 21.9 1.2 3 23 221 241 219 241 0.98 6 14 1.4e-05 0.0036 20.3 2.9 3 23 249 270 247 270 0.97 7 14 1.4e-05 0.0036 20.3 2.9 3 23 278 299 276 299 0.97 8 14 6.8e-05 0.018 18.2 0.5 3 23 307 327 305 327 0.97 9 14 0.00036 0.095 15.9 1.0 1 23 333 356 333 356 0.97 10 14 3.8e-05 0.0099 19.0 1.1 1 23 363 385 363 385 0.98 11 14 9.9e-05 0.026 17.6 2.2 1 23 391 413 391 413 0.98 12 14 0.00043 0.11 15.6 0.4 1 23 419 441 419 441 0.98 13 14 1.8e-05 0.0046 20.0 0.4 1 23 447 469 447 469 0.97 14 14 2.2e-07 5.8e-05 26.0 0.9 1 23 475 497 475 497 0.98
Sequence Information
- Coding Sequence
- ATGATTTTAGGTTTCAAATGCGAAGATACACTAACTGACGAAAATAACGAATTAAAAAATCATCTTATAAATAACCAATCGAACCAATGTACAACTGACGTTAGGAAAGTGAATATTGTTGAAAAGCCTTTTGCGTCCGAAAAGAAAAATTTTAGAACACATTTGatagttcacactggagaaaaattaTTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTAAAAGCTCATATGATCAGAAGACACAACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGAAAGTGAATATTGTTGAAAAGCCTTTTGCGTCCGAAAAGAAAAATTTTAGAACACATTTGATAGTTCACACTGGAAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAGTGAGTTAAAAATACATATGagaattcacactggtgaaaaactaTTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAGTGAGTTAAAAATACATATGagaattcacactggtgaaaaactaTTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGGGATCACCTAAAAGATCATATGTTGAGAAGGCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGGGATCACCTAAAAGATCATATGTTGAGAAGGCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTTCAAATAAAGAGTTAAAATTGCATATGAcggtgcatactggtgaaaaacgaTTTAGATGTGAAATATGCACAAAACAGTTTTCACAAAGTACGATCTTAAAAGTTCATATAATAAGAAAACACAACATTGGTCAAAAACCGTTTCGATGTGAAATGTGTGCAAAACAGTTTGTAACACATATTGACTTAAAAAGGCACATGGcggtgcatactggtgaaaaaccattttcgtgtgaaatttgcaccaaacattttttacaaagttgggatttaaaaagacatttgagaattcacactggtgaaaaaccatttgaatgtgaaatttgcaccaaacaggtTTCAACGAAACAGGTTTTAAAATTGCATATGAgtgtgcatactggtgaaaaaccattcgCGTGTGAAATATGCACAAAACAGTTTGTAACAAGTCGAGCGTTAAAAATGCATATGACAgtacatactggtgaaaaaccttatgcGTGTGAAATATGTACAAAACAGTTTGCAAGAAGTACTACCTTAAAAAGACATATGAGGGTACATACTGAACCAAAAACCATTTGA
- Protein Sequence
- MILGFKCEDTLTDENNELKNHLINNQSNQCTTDVRKVNIVEKPFASEKKNFRTHLIVHTGEKLFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQFSQSSYLKAHMIRRHNTGKKPFGCEICTKQKVNIVEKPFASEKKNFRTHLIVHTGKKPFGCEICTKQFVTHSELKIHMRIHTGEKLFGCEICTKQFVTHSELKIHMRIHTGEKLFGCEICTKQFSRRDHLKDHMLRRHTDEKPFGCEICTKQFSRRDHLKDHMLRRHTDEKPFGCEICTKQFVSNKELKLHMTVHTGEKRFRCEICTKQFSQSTILKVHIIRKHNIGQKPFRCEMCAKQFVTHIDLKRHMAVHTGEKPFSCEICTKHFLQSWDLKRHLRIHTGEKPFECEICTKQVSTKQVLKLHMSVHTGEKPFACEICTKQFVTSRALKMHMTVHTGEKPYACEICTKQFARSTTLKRHMRVHTEPKTI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437221;
- 90% Identity
- iTF_00437221;
- 80% Identity
- iTF_00437221;