Dpin003329.1
Basic Information
- Insect
- Dendrolimus pini
- Gene Symbol
- -
- Assembly
- GCA_949752895.1
- Location
- OX457126.1:8818810-8819829[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-09 2.2e-06 28.6 0.4 24 74 9 59 2 116 0.89
Sequence Information
- Coding Sequence
- ATGGTAGATAAAGTggtaaaagctaccaaaattatcGCGCTGCTTGAAGAGGGTTGCAGCCAATGTTTCGTGGCTAGGAGGCTAAATGTTAGTCGCTCGACAGTCCAAAGGACCTGGCAGCGATATCAGGAGACTGGTTCCGTCGAGAGAAGGCCTGGTTCTGGAAGAAAACCATGTACCCAACCACGGGATGATCGTTTTCTTGTGAGTCGCGCATTGAGAAATCGCAAATCTTCGTATGTGGATCTTAAGAACAACCTCCAAGAAGTAAGAAATGTGCATATTAGTCTATGGACGGTCAGGAGGAGGCTTCTCGCTGCCAATATACGCAGTCACCGCCCGGCCCGCGGCCCCAAATTACTCCGTGAGCACAGAGTTCACAGGCTTAGGTTCGCTAGAAATTGTGAATCATGGACTCAAGACGATTGGAATAGGGTTTTGTTCTCTGATGAAGCCAGGATATCTCTGTTCGGTGAAGATCGACGTCGGCGAGTGCTAAGAAGACAAGGAGAACGCTTTGCAGAGGCATGTTTCGAAGAAATCACACCTTATGGTGGGGGCTCTGTTATGTTTTGGGCAGGAATAAATTCAATGGATCGTACAGAGTTAGTCTTCATTGAAAACGGCTCACTGACTGGGCATCGATACATAACGGAAGTTCTAATTTCTCATGCACAACCCGCATTGGCCGCTCTAGGTGAAGACTCGATTTTTATGGACGACAATGCTCGCGCCCACCGATCCCGCGATGTTAATGCGTATGTGCAAGAGGTCGGCATTCGTCGTTTGGATTGGCCAGCTCGAAGTCCCGACCTCAATCCCATAGAGCATGTCTGGGACGTTCTGAAACGGCGTGTGAGATCAGTACACCCGGCTCCGCAGACCATCAGAGAGCTGAAGAATGTGATTACTGCGGAGTGGGAACGTATTCCGCAAGCAAGTATCCGGGATATACTCGATAGCATGCCCAGACGAATTCAAGCTGTGATTTTAGCTAGAGGGGGTCACACTCGATACTAA
- Protein Sequence
- MVDKVVKATKIIALLEEGCSQCFVARRLNVSRSTVQRTWQRYQETGSVERRPGSGRKPCTQPRDDRFLVSRALRNRKSSYVDLKNNLQEVRNVHISLWTVRRRLLAANIRSHRPARGPKLLREHRVHRLRFARNCESWTQDDWNRVLFSDEARISLFGEDRRRRVLRRQGERFAEACFEEITPYGGGSVMFWAGINSMDRTELVFIENGSLTGHRYITEVLISHAQPALAALGEDSIFMDDNARAHRSRDVNAYVQEVGIRRLDWPARSPDLNPIEHVWDVLKRRVRSVHPAPQTIRELKNVITAEWERIPQASIRDILDSMPRRIQAVILARGGHTRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00695544;
- 90% Identity
- iTF_00428095;
- 80% Identity
- iTF_00432161; iTF_00432130; iTF_00432162; iTF_00432131; iTF_00432163; iTF_00432132; iTF_00432164; iTF_00432133; iTF_00432165; iTF_00432134; iTF_00432166; iTF_00432135; iTF_00432167; iTF_00432136; iTF_00432168; iTF_00432137; iTF_00432169; iTF_00432138; iTF_00432170; iTF_00432139; iTF_00432140; iTF_00432141; iTF_00432142; iTF_00432143; iTF_00432144; iTF_00432145; iTF_00432146; iTF_00432147; iTF_00432148; iTF_00432149; iTF_00432150; iTF_00432151; iTF_00432152; iTF_00432153; iTF_00432154; iTF_00432155; iTF_00432156; iTF_00432125; iTF_00432157; iTF_00432126; iTF_00432158; iTF_00432127; iTF_00432159; iTF_00432128; iTF_00432160;