Dpon002195.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- Znf335_2
- Assembly
- GCA_000355655.1
- Location
- NW:511356-513601[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1 3.5e+03 -2.5 0.1 22 30 234 242 217 244 0.55 2 6 0.0039 13 5.2 0.0 22 45 262 285 253 289 0.84 3 6 0.0012 4.2 6.8 0.0 21 46 320 345 308 352 0.86 4 6 8.1e-05 0.28 10.6 0.1 20 48 375 403 368 416 0.87 5 6 0.007 24 4.4 0.4 21 43 432 454 424 459 0.80 6 6 6.9e-05 0.24 10.8 0.3 21 47 460 486 452 491 0.89
Sequence Information
- Coding Sequence
- ATGAGAACATGGAAATTAATGGACGAAAATATGGAAATCCATTACGAAAAAGCATGCAGGCTGTGCTTGAAATCATCTAGAAACATGTTCGACATGTTTACCTATCTGTTGCAACCTAGTCAAATTTCCCTAGTGGACTTTACTAGAAAGTTAACAGACCTAAAACTTGCAAAAGGAGAGTTTCTGCCAAGCAACATTTGCACCACTTGTATTGAATGCATAAATTCCACGCACAGTTTTATCAATGTGTGCCGGGCTTCGGATGATATTCTAAAGAAAGAAGAAACCAGACGCGAATTCCGCAAAATCGAGCAAGAGGCTCTTTTGGATGAGCACGAAACTGGGCATTTTGAGGAAGACGCGCACCTGAACGAAGGGGGCGATTTGTCTGAAGCAGTTTCTGCGGATATTAGTGGGAAAAGTCAAACAGTGGAAGTCATAAAATTACCTGaaaaaatgcaggaaaaatATGCGTGCAGTTTTTGCGAAGTAAAATTTAGCAACAAATTAAAGTTCCTTACTCACCAGAGTCTGCATGACGAAACCAAGCCATTCAAGTGCTCTTCCTGTCTACACAGCTTTTCCAAAGAGGTTAAACTGcataatttccaaataatgaaaaatcagtttttattaatctgGGTATTTAATCTTCAGGCTCACTTGCGAGTACATTTGCGGTCTCATGCCAATCCCGAAGAAAAAAAGCACTCATGCCCTACATGCGGCAAACAGTTTTTCTATGCTTATTTGCTAAAGCAGCATGAGTACAAGCATTCAGATCAAAAACCGTTTCCGTGCTCCAAATGCGACAAAGGATGCCTGACCTCCGAAAATCTGAGGCGACACATGAAAACTCACGATGAGAACTACACTAAGAAAGTATACAGATGCACAGTgtgcagaaaaatatttccgtaTCCCAGTTCACTGTCGGAGCACATGAAGTTGCATACCGGCGAAAAGCCCCATCTTTGCTCGATATGTGGAAAGGGGTTCAGGCAGAGCGGGTCTTTGCATTTCCACCAGCGAATCCACACAGGCTACAAGCCATTCAAATGTGAGAAATGCTCGGAATATTTCAAGTCTAGAAGCCTGCTGAAGGTACACATGCGAAAGCACACCAATGAAAGGCCGTTTGTCTGCGACACCTGCGGAATGGCTTTCCGACAGTCCAACGACTTAAAAAGCCATTTGAGGACTCACACTGGGGAGAAACCGGTTTTATGTACACTGTGTGGCAAGAGAATGGGCACTACTGGACAATTGACGATTCATTTAAGAACCCACACCCGCGAGAAACCCTATACATGCGCAACTTGTTACAAGTCATTTGCTACCAAATCGGTTTTGCAAAAGCATCATCGCATCCACACAGGTGAAAGACCGTACGAATGCTCAATTTGCCATAAATCATTCAATCAAAGTTCGACACTGAAAACCCATTTAAATATCCACAGCTCTGAGAAGGAAAAAGGCGATTGCAATCGGCGAAAACGGGACTGTAAAAAAGCTTCCCGAAACCCCGATAAGGCCACTGTGGAAATTCAAGTTAATGATGAAGTAAAAGTGAATACGGATGTGCGGACTCAATTTACTGTGATTCTGCCAGCCCCCATACCATTGCTTAGTACGACTGATtag
- Protein Sequence
- MRTWKLMDENMEIHYEKACRLCLKSSRNMFDMFTYLLQPSQISLVDFTRKLTDLKLAKGEFLPSNICTTCIECINSTHSFINVCRASDDILKKEETRREFRKIEQEALLDEHETGHFEEDAHLNEGGDLSEAVSADISGKSQTVEVIKLPEKMQEKYACSFCEVKFSNKLKFLTHQSLHDETKPFKCSSCLHSFSKEVKLHNFQIMKNQFLLIWVFNLQAHLRVHLRSHANPEEKKHSCPTCGKQFFYAYLLKQHEYKHSDQKPFPCSKCDKGCLTSENLRRHMKTHDENYTKKVYRCTVCRKIFPYPSSLSEHMKLHTGEKPHLCSICGKGFRQSGSLHFHQRIHTGYKPFKCEKCSEYFKSRSLLKVHMRKHTNERPFVCDTCGMAFRQSNDLKSHLRTHTGEKPVLCTLCGKRMGTTGQLTIHLRTHTREKPYTCATCYKSFATKSVLQKHHRIHTGERPYECSICHKSFNQSSTLKTHLNIHSSEKEKGDCNRRKRDCKKASRNPDKATVEIQVNDEVKVNTDVRTQFTVILPAPIPLLSTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00431632;
- 90% Identity
- iTF_00431632;
- 80% Identity
- iTF_00431632;