Basic Information

Insect: Dendroctonus ponderosae
Gene Symbol: Znf335
Assembly: GCA_000355655.1
Location: NW:511356-513601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.015 0.76 9.6 1.8 1 23 157 179 157 179 0.96

2 12 2.5 1.3e+02 2.6 1.1 1 16 185 200 185 202 0.86

3 12 0.17 8.5 6.3 0.7 9 23 215 229 214 229 0.86

4 12 0.00031 0.016 14.9 3.0 1 23 237 259 237 259 0.95

5 12 2.1e-05 0.0011 18.6 3.0 1 23 265 287 265 287 0.98

6 12 2.8e-06 0.00014 21.3 0.5 1 23 296 318 296 318 0.98

7 12 0.00036 0.019 14.7 3.3 3 23 326 346 324 346 0.95

8 12 1.2e-06 6.5e-05 22.4 3.2 1 23 352 374 352 374 0.99

9 12 1.9e-07 1e-05 25.0 0.6 1 23 380 402 380 402 0.98

10 12 0.0014 0.075 12.8 0.5 3 23 410 430 409 430 0.99

11 12 1.3e-05 0.00065 19.3 3.3 1 23 436 458 436 458 0.99

12 12 1.5e-07 7.9e-06 25.3 3.0 1 23 464 486 464 486 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.015	0.76	9.6	1.8	1	23	157	179	157	179	0.96
2	12	2.5	1.3e+02	2.6	1.1	1	16	185	200	185	202	0.86
3	12	0.17	8.5	6.3	0.7	9	23	215	229	214	229	0.86
4	12	0.00031	0.016	14.9	3.0	1	23	237	259	237	259	0.95
5	12	2.1e-05	0.0011	18.6	3.0	1	23	265	287	265	287	0.98
6	12	2.8e-06	0.00014	21.3	0.5	1	23	296	318	296	318	0.98
7	12	0.00036	0.019	14.7	3.3	3	23	326	346	324	346	0.95
8	12	1.2e-06	6.5e-05	22.4	3.2	1	23	352	374	352	374	0.99
9	12	1.9e-07	1e-05	25.0	0.6	1	23	380	402	380	402	0.98
10	12	0.0014	0.075	12.8	0.5	3	23	410	430	409	430	0.99
11	12	1.3e-05	0.00065	19.3	3.3	1	23	436	458	436	458	0.99
12	12	1.5e-07	7.9e-06	25.3	3.0	1	23	464	486	464	486	0.98

Sequence Information

Coding Sequence: ATGAGAACATGGAAATTAATGGACGAAAATATGGAAATCCATTACGAAAAAGCATGCAGGCTGTGCTTGAAATCATCTAGAAACATGTTCGACATGTTTACCTATCTGTTGCAACCTAGTCAAATTTCCCTAGTGGACTTTACTAGAAAGTTAACAGACCTAAAACTTGCAAAAGGAGAGTTTCTGCCAAGCAACATTTGCACCACTTGTATTGAATGCATAAATTCCACGCACAGTTTTATCAATGTGTGCCGGGCTTCGGATGATATTCTAAAGAAAGAAGAAACCAGACGCGAATTCCGCAAAATCGAGCAAGAGGCTCTTTTGGATGAGCACGAAACTGGGCATTTTGAGGAAGACGCGCACCTGAACGAAGGGGGCGATTTGTCTGAAGCAGTTTCTGCGGATATTAGTGGGAAAAGTCAAACAGTGGAAGTCATAAAATTACCTGaaaaaatgcaggaaaaatATGCGTGCAGTTTTTGCGAAGTAAAATTTAGCAACAAATTAAAGTTCCTTACTCACCAGAGTCTGCATGACGAAACCAAGCCATTCAAGTGCTCTTCCTGTCTACACAGCTTTTCCAAAGAGGTTAAACTGcataatttccaaataatgaaaaatcagtttttattaatctgGGTATTTAATCTTCAGGCTCACTTGCGAGTACATTTGCGGTCTCATGCCAATCCCGAAGAAAAAAAGCACTCATGCCCTACATGCGGCAAACAGTTTTTCTATGCTTATTTGCTAAAGCAGCATGAGTACAAGCATTCAGATCAAAAACCGTTTCCGTGCTCCAAATGCGACAAAGGATGCCTGACCTCCGAAAATCTGAGGCGACACATGAAAACTCACGATGAGAACTACACTAAGAAAGTATACAGATGCACAGTgtgcagaaaaatatttccgtaTCCCAGTTCACTGTCGGAGCACATGAAGTTGCATACCGGCGAAAAGCCCCATCTTTGCTCGATATGTGGAAAGGGGTTCAGGCAGAGCGGGTCTTTGCATTTCCACCAGCGAATCCACACAGGCTACAAGCCATTCAAATGTGAGAAATGCTCGGAATATTTCAAGTCTAGAAGCCTGCTGAAGGTACACATGCGAAAGCACACCAATGAAAGGCCGTTTGTCTGCGACACCTGCGGAATGGCTTTCCGACAGTCCAACGACTTAAAAAGCCATTTGAGGACTCACACTGGGGAGAAACCGGTTTTATGTACACTGTGTGGCAAGAGAATGGGCACTACTGGACAATTGACGATTCATTTAAGAACCCACACCCGCGAGAAACCCTATACATGCGCAACTTGTTACAAGTCATTTGCTACCAAATCGGTTTTGCAAAAGCATCATCGCATCCACACAGGTGAAAGACCGTACGAATGCTCAATTTGCCATAAATCATTCAATCAAAGTTCGACACTGAAAACCCATTTAAATATCCACAGCTCTGAGAAGGAAAAAGGCGATTGCAATCGGCGAAAACGGGACTGTAAAAAAGCTTCCCGAAACCCCGATAAGGCCACTGTGGAAATTCAAGTTAATGATGAAGTAAAAGTGAATACGGATGTGCGGACTCAATTTACTGTGATTCTGCCAGCCCCCATACCATTGCTTAGTACGACTGATtag
Protein Sequence: MRTWKLMDENMEIHYEKACRLCLKSSRNMFDMFTYLLQPSQISLVDFTRKLTDLKLAKGEFLPSNICTTCIECINSTHSFINVCRASDDILKKEETRREFRKIEQEALLDEHETGHFEEDAHLNEGGDLSEAVSADISGKSQTVEVIKLPEKMQEKYACSFCEVKFSNKLKFLTHQSLHDETKPFKCSSCLHSFSKEVKLHNFQIMKNQFLLIWVFNLQAHLRVHLRSHANPEEKKHSCPTCGKQFFYAYLLKQHEYKHSDQKPFPCSKCDKGCLTSENLRRHMKTHDENYTKKVYRCTVCRKIFPYPSSLSEHMKLHTGEKPHLCSICGKGFRQSGSLHFHQRIHTGYKPFKCEKCSEYFKSRSLLKVHMRKHTNERPFVCDTCGMAFRQSNDLKSHLRTHTGEKPVLCTLCGKRMGTTGQLTIHLRTHTREKPYTCATCYKSFATKSVLQKHHRIHTGERPYECSICHKSFNQSSTLKTHLNIHSSEKEKGDCNRRKRDCKKASRNPDKATVEIQVNDEVKVNTDVRTQFTVILPAPIPLLSTTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00431809;
90% Identity: iTF_00431809;
80% Identity: iTF_00431809;