Dpor016814.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- ZEB2
- Assembly
- GCA_905220455.1
- Location
- LR999998.1:4671754-4682965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.001 0.076 13.9 2.7 1 23 212 234 212 234 0.98 2 11 2.9 2.2e+02 3.0 0.3 1 20 241 260 241 264 0.86 3 11 9.1e-05 0.0067 17.2 0.6 1 23 295 318 295 318 0.97 4 11 0.11 8 7.5 0.4 1 23 322 345 322 345 0.89 5 11 0.14 10 7.2 0.2 1 17 363 379 363 382 0.90 6 11 0.13 9.7 7.3 0.2 2 23 397 419 396 419 0.94 7 11 0.0021 0.16 12.9 1.5 2 23 425 447 424 447 0.96 8 11 9.5e-05 0.0071 17.1 1.0 2 23 465 486 464 486 0.97 9 11 7.1e-06 0.00053 20.7 2.2 1 23 492 514 492 514 0.99 10 11 5.7e-06 0.00042 21.0 3.0 1 23 520 542 520 542 0.94 11 11 2.9e-06 0.00022 21.9 1.8 1 23 548 571 548 571 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGGTGTTAGCATGTCGTGCGTGCCTCGCCACGGGCGTCAAATTGCACAACATGCACTCAAACAATCTTGTTAGCGCTTACGAAAATCTTACTGGATATAAGATGATAAAGTCTGAGAACTTCCCGGAACACATGTGCACGTACTGCACAACGATGTTATTGAAGAGTGTTTCGTTCAAAGACAAGTGCAAAAGAGCCATGGATGTGCTGAATTCAACACTCATACAGTCTGGAATGGTAACGCCAACCGATATACTGAATATAGACAGGCAGTACAACAAACTAGCTCTGCCATACAAGTGTCACAGCCAAATCCTGATAAAAGAGGAGGTTGGTAACGAGCAAGAGGAACCTACTCTCGAGGAGATGGATAATGATGGCTTTGGTGATGAAGCTGATGATGCAGATACCTCAACCACACCAGAAATAAAAGATATTAAAGACATTGAAAGCAGTGAAGATGAACCCCTATCTTTAAAAGTAGAAAAGAAAAAATGCACAAAAGATGTCTTACCGAAGCGCAAAGATTTTGAAAATGTGAATATAGAACTAATTACTTTGACTAAAGAAGAACAAATACAAGAGGTTTTAGCTAGGAAATTGTCTGTGAATTACCAGAATTCGTTGTATAAATGTGATAAGTGTTTCAAAGGGTTTATTACTGATGTGACGTACAAGAACCATATGTATAGACATGATCCGTCCGCGGGTCCACATTCCTGCGAGGTCTGTCACACTTACTGGGTGAGTGCGCGCGCGCTCCGATCTCACGTCGTAGCGGCGCACGCGCGCAAGTTCGTGTGTCGTGCTTGCGAACACGTTACGCGCTCCGTGCACCGAGCGAGAGAGCACGCTTACTGGCATAACGGACACACATTTCGTTGCAAAGTATGCGGCGCGGTATTCGCCAAATCCACAAGCTACCTCACGCACCTAAGGTTGCAACATCCGTCCAAACACCGCTGCGAACTCTGCGGCGAATCATTCCTGGGGGTCAATGGACTCAATATACACAAGAAGAAAGCACATAGAGTTAATCAGGTAGATATATTTACAATTATTTGGGCAGAGACGGAAGAATTCGTCTGCAGTGATTGTAAAGCAGTGTTCCACAACCGGGAAGCGCTGGAGTTTCACGAGTCACAAAGACTGGACAACTTGGGCTGCGAAATTGGACTCAAGCCCTGTTCTCAGTGTGGACAAAGTTATCTAACAGAGGAAAGGTTACAAGAACATGTCATGATGCAACATAGAGTGGACGCGCTTAAATGCTTACAGTGCGACAGAACGTTCGCCCACAAGCGCTCCATAGCGGTTCATTATCAGCGCGTTCACCTCGGAGTGAAGACCAGCCCCGGCGGCGACGCCCGCAGGAAACTTGTCGTCGTCTGCGAGATATGCGGCCTCAAGTGTATATCGAAAGCTTCCCTAGTTCATCACCAAAGGATTCACTCCGGAGAGAAACCGTTCCAATGTCCAGAATGTCCTAAGAAGTTTAGTGTGTGTCAAAGACTACAGATCCATCTACGAACGCACACAGGGGAGAGACCTTTCAAGTGCCACATATGCCCGAAGGCGTTCAAGCATAAAGCAGCCCTCAACAGACATGACAGGGTGCACACGGGTGCAAAGCCGTACGCGTGTCTGCACTGCGGCAAGTCGTTCTCGCAGTCCAACTCCATGAAGCTGCACGTCCGCACCGTCCACCTGCACATGCCGGCGCCCTACCGCGCCAGGCGCAACACCACTGCTATCAATACATAA
- Protein Sequence
- MEEVLACRACLATGVKLHNMHSNNLVSAYENLTGYKMIKSENFPEHMCTYCTTMLLKSVSFKDKCKRAMDVLNSTLIQSGMVTPTDILNIDRQYNKLALPYKCHSQILIKEEVGNEQEEPTLEEMDNDGFGDEADDADTSTTPEIKDIKDIESSEDEPLSLKVEKKKCTKDVLPKRKDFENVNIELITLTKEEQIQEVLARKLSVNYQNSLYKCDKCFKGFITDVTYKNHMYRHDPSAGPHSCEVCHTYWVSARALRSHVVAAHARKFVCRACEHVTRSVHRAREHAYWHNGHTFRCKVCGAVFAKSTSYLTHLRLQHPSKHRCELCGESFLGVNGLNIHKKKAHRVNQVDIFTIIWAETEEFVCSDCKAVFHNREALEFHESQRLDNLGCEIGLKPCSQCGQSYLTEERLQEHVMMQHRVDALKCLQCDRTFAHKRSIAVHYQRVHLGVKTSPGGDARRKLVVVCEICGLKCISKASLVHHQRIHSGEKPFQCPECPKKFSVCQRLQIHLRTHTGERPFKCHICPKAFKHKAALNRHDRVHTGAKPYACLHCGKSFSQSNSMKLHVRTVHLHMPAPYRARRNTTAINT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01430210; iTF_00819493; iTF_00428444;
- 90% Identity
- iTF_01430210;
- 80% Identity
- -