Delp025804.1
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- ZEB1
- Assembly
- GCA_949752805.1
- Location
- OX457122.1:671253-681166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.091 13.9 2.7 1 23 211 233 211 233 0.98 2 11 5.6 4.6e+02 2.3 0.2 1 20 240 259 240 263 0.84 3 11 9.8e-05 0.0081 17.2 0.6 1 23 294 317 294 317 0.97 4 11 0.12 9.6 7.6 0.4 1 23 321 344 321 344 0.89 5 11 0.37 30 6.0 0.3 1 17 352 368 352 371 0.87 6 11 0.012 1 10.6 0.3 2 23 386 408 385 408 0.95 7 11 0.0023 0.19 12.9 1.5 2 23 414 436 413 436 0.96 8 11 0.0001 0.0085 17.2 1.0 2 23 454 475 453 475 0.97 9 11 7.7e-06 0.00063 20.7 2.2 1 23 481 503 481 503 0.99 10 11 6.1e-06 0.0005 21.0 3.0 1 23 509 531 509 531 0.94 11 11 3.2e-06 0.00026 21.9 1.8 1 23 537 560 537 560 0.97
Sequence Information
- Coding Sequence
- atggaGGAAGTGTTAGCATGTCGTGCGTGCCTCGCCACGGGCGTTAAATTGCACAACATGCACTCAAATAATCTTGTTAGCGCTTACGAAAATCTTACTGGATTTAAGatgATAAAGTCAGAGAACTTCCCGGAACACATGTGCACGTACTGCACAACAATGTTATTGAAGAGTGTTTCGTTCAAAGACAAGTGTAAAAGAGCCATGGATGTGCTGAATTCAACACTCATACAGTCTGGAATGGTAACGCCAACCGATATACAGAATATAGACAGACAATACAACAAACTGGCTCTGCCATACAAGTGTCAAAGCCAAGTCCTGATAAAAGAGGAGGTTGGTAACGAGCAAGAGGAACCTCTCGAGGAGATGGATAATGAAGGCTTTGGTGATGAAATTGATGATGCAGatacCTCAACCACACCAGAAATAAAAGATATTAAAGATATAGAAAGCAGTGAAGATGAACCCCTATCTTTAAAAGTGGAAAAGAAAAAATGCACAAAAGATGTCTTACCGAAGCACAAAGATTTTGAAAATGTGAATATAGAGCTAATTACTTTGACTAAAGAAGAACAAATACAAGAGGTTTTATCTAGGAAATTGTCTGTGAATTATCAGAATTCATTGTATAAATGTGATAAGTGTTTCAAAGGGTTTATTACTGATGTGACGTACAAAAACCATATGTATAGACATGATCCGtcCGCGGGTCCACATGCCTGCGAGGTCTGTCACACTTACTGGGTGAGTGCGCGCGCGCTCCGATCTCACGTCGTAGCGGCGCACGCGCGCAAGTTCGTGTGTCGGGCTTGCGAACACGTTACGCGCTCCGTGCACCGAGCGAGGGAGCATGCTTACTGGCACAACggACACACGTTTCGTTGCAAAGTATGCGGCGCGGTATTCGCCAAATCCACAAGCTACCTCACGCACCTAAGGCTGCAACATCCGTCCAAACACCGCTGCGAACTCTGCGGCGAATCATTTCTGGGGGTCAACGGACTCAATATACACAAGAAGAAAGCGCATAGAGTTAATCAGATTGAAGAGTTCGTCTGCAGTGATTGTAAAGCGGTGTTCCACAAACGGGAAGCGCTGGAGTTTCACGAGTCACAAAGACTGGACAACTTGGGCTGCGGGATTGGACTCAAGCCCTGTGCTCAGTGTGGACACAGTTATATCACAGAGGAGCGGTTGCAAGAACATGTTATGATGCAACATAGAGTGGACGCACTTAAATGCTTACAGTGCGACAGAACGTTCGCCCACAAGCGCTCCATCGCAGTGCATTACCAGCGCGTGCACCTCGGCGTGAAGGCCGGCGCCGGCGGCGACGCCCGCAGGAAACTTGTCGTCGTCTGCGAGATATGCGGCCTCAAGTGTATCTCAAAAGCATCCTTAGTTCATCACCAAAGGATTCACTCCGGAGAGAAACCGTTCCAGTGTCCGGAATGTCCTAAGAAGTTTAGTGTGTGTCAAAGACTACAGATACATCTACGAACGCACACGGGGGAGCGGCCGTTCAAATGCCACATATGTCCGAAGGCGTTCAAGCATAAAGCTGCCCTCAACAGACATGACAGGGTGCACACGGGTGCAAAGCCGTACGCGTGTCTGCACTGCGGCAAGTCGTTCTCGCAGTCCAACTCTATGAAGCTGCACGTGCGCACCGTGCACCTGCACATGCCGGCGCCCTACCGCGCCAGGCGCAACACCACTGCtatcaatacataa
- Protein Sequence
- MEEVLACRACLATGVKLHNMHSNNLVSAYENLTGFKMIKSENFPEHMCTYCTTMLLKSVSFKDKCKRAMDVLNSTLIQSGMVTPTDIQNIDRQYNKLALPYKCQSQVLIKEEVGNEQEEPLEEMDNEGFGDEIDDADTSTTPEIKDIKDIESSEDEPLSLKVEKKKCTKDVLPKHKDFENVNIELITLTKEEQIQEVLSRKLSVNYQNSLYKCDKCFKGFITDVTYKNHMYRHDPSAGPHACEVCHTYWVSARALRSHVVAAHARKFVCRACEHVTRSVHRAREHAYWHNGHTFRCKVCGAVFAKSTSYLTHLRLQHPSKHRCELCGESFLGVNGLNIHKKKAHRVNQIEEFVCSDCKAVFHKREALEFHESQRLDNLGCGIGLKPCAQCGHSYITEERLQEHVMMQHRVDALKCLQCDRTFAHKRSIAVHYQRVHLGVKAGAGGDARRKLVVVCEICGLKCISKASLVHHQRIHSGEKPFQCPECPKKFSVCQRLQIHLRTHTGERPFKCHICPKAFKHKAALNRHDRVHTGAKPYACLHCGKSFSQSNSMKLHVRTVHLHMPAPYRARRNTTAINT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429324;
- 90% Identity
- iTF_01430210;
- 80% Identity
- -