Dpor001762.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999971.1:17054223-17058749[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2 1.7e+02 3.4 0.1 3 23 157 178 155 178 0.92 2 18 0.0014 0.1 13.5 0.1 1 23 202 224 202 224 0.98 3 18 0.00057 0.042 14.7 0.2 1 23 228 250 228 250 0.98 4 18 0.00047 0.035 15.0 1.0 1 23 255 278 255 278 0.95 5 18 0.024 1.8 9.6 0.7 2 23 285 307 285 307 0.93 6 18 0.1 7.4 7.6 7.0 1 23 314 337 314 337 0.96 7 18 8.6e-05 0.0064 17.3 4.9 2 23 344 365 343 365 0.96 8 18 0.0003 0.023 15.6 4.1 1 23 371 393 371 393 0.98 9 18 0.22 16 6.6 0.9 1 23 528 550 528 550 0.92 10 18 0.01 0.76 10.7 0.9 2 23 576 597 576 597 0.97 11 18 0.00071 0.052 14.4 0.3 1 23 619 641 619 641 0.98 12 18 7e-06 0.00052 20.7 0.3 1 23 645 667 645 667 0.99 13 18 1.7e-05 0.0013 19.5 0.4 1 23 672 695 672 695 0.96 14 18 4.9e-05 0.0036 18.1 0.5 2 23 702 724 702 724 0.97 15 18 0.00014 0.011 16.6 0.7 1 23 731 754 731 754 0.96 16 18 0.001 0.075 13.9 4.5 2 23 761 782 760 782 0.97 17 18 1.5e-06 0.00011 22.8 1.6 1 23 788 810 788 810 0.98 18 18 1.2e-05 0.0009 20.0 1.0 1 23 813 835 813 835 0.98
Sequence Information
- Coding Sequence
- ATGGGCTTTAAAGGAACATCATTATTAAGGTGTAAGAAGATCGTGCCGTTATTCCAAGTAGCGTACGACTGGACTCTGTGTAAACCGCTCGGAACTGTAATGGACTTCTCAAAGTTACCTCCGAAACGGCCGCCGACGCCGGACTCGCCTCGCAGCGCATCCCCTCTGCCCGAGAGCGAGAGCATGCCACCGACGCCACAGACAACGCCCATTCACATCCCCCGCCCTAAACCCTTGAAACAAGGGCCAGATGTGAGGCAAAACGCATTGATCATCTTCGAGTTTTCAACAGCTTATCCCTTTGTCTACGGAAACAATAAATTCAAATGCTTCATTTGTTCCCAGCCATATTTGGATTTGACAATATTAAAACAGCACATGCACGACACTCACACGTTCGCCTCATTAAAACGAAGAGTTAACAATCGCAGAGAGAATATCTTGAAAGTGGACGTTAATGACATGATATGTAAATTGTGTCCTGCAAAACCGAAGGACTTAGTGGAATTGAAGCAACACCTCAATCTTGTTCACATGAAACCAGTGGATCCAGACCTTCACGATAATTTGATTCCGTTTAAATTGAACTCGGTTAATGGGCCCTACGAGTGTGTGGTATGTAAGGAGTCTTTCATCAAAGTGAGGACTCTGGTCATCCACATGAGCGTTCACTTCAACAACTACAGCTGCGAGGTGTGCGGCTCAGGGTTCATGACGTTGCGCCTTCTCAAGAAGCATCTGGAAGTACACGAGACCGGGAACCATCCGTGCGACCTGTGCGAGAAGACATTCAGCACTGCGTACAAGAGGACGCTGCACATCCGCGGAGTTCATTTGAAGCAGTATCCTCGACGGTGTCCGCTCTGTTCCGAACGGTTCAACTCTAACTACAAACGTACTATCCACCTCCAAGACGTCCATAATCAGTCGACGAGGGTTCATAAATGTCAGACGTGTGGCAGAGGATTCAACTTAAAGTATCATTTGATTTGTCACACACGCTCTGTTCACATGCAAGAGCGGAACCAGCAGTGCGATGTGTGCCACCAGAGGTTCTGCAACAAGGAGACGTTGAAGCGGCACATGGTCATCCACACTGGAGAGAAGAACCACAAGTGCCACGTCTGCGGCATGGCCTTCCTGAGGAGAAAGAATCTCAAAGATCACTTACGACTGCACGATCTGGGACTCATCGAAGAGACAAATTCAACAATAATTGTAAAAGACGACGATGGCAGCGACATCAAACTCACATTATTAAAAAACCCAATCGCCCTCAACGACTTGGAGTGTCATTACGAAGAAAATGACGTCAATAATAAAAGAAAATATAAACAAGATAAATTTCAAAAAAATAGGAGGAGAGCGAGCATGGCCTTTCTAAAAGAACCAATAGCGTTAGACAAAATAGATTGGGGCCCTGAGAACAAGGCCATAACCTTTCACGTGAAGACAATACAAGGCACATGCCTCCGAGAAGTTACCAGAACAAAGACAAGGTCGGACCAGAAATGGAAAGAGAACGCGTTGACCATCTTCGAAAATTCTCTCGTCTACCCTTTCATACACGCAAGCAATAAATACAAGTGCTTCATATGTTCCAAGCAATTTCTCGAAGCTACCTTGTTGAAAGAACATTCCCTAAACCACACCATTAAAGAAATGAGAGAGGAATTAAACAATCGAGTGAGAGATAAAAACATCAAAGTAGACGTAACTTATGCTCAGTGTAAATTGTGTTCAAAAACATTACCAGATTTTAATACATTAAAAATACATTTAAAAGAACACGGGAAGAAACTCGATCCAGATTTCCAAGATAACCTCATTCCATTTAAGCTCGGCGGCGATAATTTCGAGTGCCAAGTGTGCGGGGAAAGGTATATGAAATTAAGATTACTGATAATCCACATGAGCAAGCACTTCAACAACTACAGCTGTGAGATCTGCGGGTCGGTTTTCATTTCCCTGACCTTGCTTAAGCGCCATCTGCAGACGCACGAGTCTGGGAACTTCCCTTGCGAGAAGTGCGACAAAGTGTTCACCAACTCGGCGAAACGAACTCTACACATGCGCGGCGTCCACCTGAAGCAGTTCCCACGACGCTGCCCCATCTGCCCGGAACGGTTCAACTCCAACTACCAGAGGACGAAGCATCTGCGAATAGTGCACAACCAAACCACTGGCTTGTTCCGCTGCGAGACCTGTGGGAGAGAATACGATTTGAAATACCATTTGCTAGTTCACATACGAGCAGTGCACCTGCAAGAACGGAACCAGGAGTGCCCTATTTGCCATTCCAGATTCTTTTCCAAGTACTGCCTCTCTCGACACATGATGATACACACGGGCGAGAAGAATTTCAAATGCGATGTTTGCGGGAAGGCGTATTCCAGGAGGAAGAATTTGAGGGAACATTCTAAATCGCACGCGGGACATGTGTGCACCGTGTGCGGACAACACTTTAATGATCAAGCCAGTTTGATAGTACACGTCAATACACATGGAGTTTTGTGA
- Protein Sequence
- MGFKGTSLLRCKKIVPLFQVAYDWTLCKPLGTVMDFSKLPPKRPPTPDSPRSASPLPESESMPPTPQTTPIHIPRPKPLKQGPDVRQNALIIFEFSTAYPFVYGNNKFKCFICSQPYLDLTILKQHMHDTHTFASLKRRVNNRRENILKVDVNDMICKLCPAKPKDLVELKQHLNLVHMKPVDPDLHDNLIPFKLNSVNGPYECVVCKESFIKVRTLVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHETGNHPCDLCEKTFSTAYKRTLHIRGVHLKQYPRRCPLCSERFNSNYKRTIHLQDVHNQSTRVHKCQTCGRGFNLKYHLICHTRSVHMQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNHKCHVCGMAFLRRKNLKDHLRLHDLGLIEETNSTIIVKDDDGSDIKLTLLKNPIALNDLECHYEENDVNNKRKYKQDKFQKNRRRASMAFLKEPIALDKIDWGPENKAITFHVKTIQGTCLREVTRTKTRSDQKWKENALTIFENSLVYPFIHASNKYKCFICSKQFLEATLLKEHSLNHTIKEMREELNNRVRDKNIKVDVTYAQCKLCSKTLPDFNTLKIHLKEHGKKLDPDFQDNLIPFKLGGDNFECQVCGERYMKLRLLIIHMSKHFNNYSCEICGSVFISLTLLKRHLQTHESGNFPCEKCDKVFTNSAKRTLHMRGVHLKQFPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLVHIRAVHLQERNQECPICHSRFFSKYCLSRHMMIHTGEKNFKCDVCGKAYSRRKNLREHSKSHAGHVCTVCGQHFNDQASLIVHVNTHGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010603;
- 90% Identity
- iTF_01430118; iTF_00428347;
- 80% Identity
- -