Delp001816.2
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- -
- Assembly
- GCA_949752805.1
- Location
- OX457094.1:3467747-3471548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.4 1.9e+02 3.4 0.1 3 23 124 145 122 145 0.92 2 18 0.0015 0.12 13.5 0.1 1 23 169 191 169 191 0.98 3 18 0.0006 0.05 14.8 0.2 1 23 195 217 195 217 0.98 4 18 0.0005 0.041 15.0 1.0 1 23 222 245 222 245 0.95 5 18 0.025 2.1 9.7 0.7 2 23 252 274 252 274 0.93 6 18 0.11 8.7 7.7 7.0 1 23 281 304 281 304 0.96 7 18 9.1e-05 0.0075 17.3 4.9 2 23 311 332 310 332 0.96 8 18 0.00032 0.026 15.6 4.1 1 23 338 360 338 360 0.98 9 18 0.23 19 6.6 0.9 1 23 495 517 495 517 0.92 10 18 0.011 0.89 10.8 0.9 2 23 543 564 543 564 0.97 11 18 0.00075 0.061 14.5 0.3 1 23 586 608 586 608 0.98 12 18 7.4e-06 0.00061 20.8 0.3 1 23 612 634 612 634 0.99 13 18 1.8e-05 0.0015 19.6 0.4 1 23 639 662 639 662 0.96 14 18 5.1e-05 0.0042 18.1 0.5 2 23 669 691 669 691 0.97 15 18 0.00015 0.013 16.6 0.7 1 23 698 721 698 721 0.96 16 18 0.0035 0.29 12.4 3.9 2 23 728 749 727 749 0.96 17 18 6.9e-07 5.7e-05 24.0 1.5 1 23 755 777 755 777 0.98 18 18 1.7e-05 0.0014 19.6 0.8 1 23 780 802 780 802 0.97
Sequence Information
- Coding Sequence
- ATGGACTTCTCAAAGTTGCCTCCGAAACGGCCGCCGACGCCGGACTCGCCTCGCAGCGCATCCCCTCTGCCCGAGAGCGAGAGCATGCCACCGACGCCGCAGACAACACCCATCCACATTCCCCGCCCTAAACACTTGAAACAAgggccagatgtgaggcaaaaTGCATTGATCATCTTCGAGTTTTCAACAGCTTATCCCTTTGTCTACGGaaacaataaattcaaatgCTTCATTTGCTCTCAGCCGTATTTGGATTTGACAATATTGAAACAGCACATGCACGACACTCACACGTTCGCCTCATTAAAACGAAGAGTTAACAATCGCAGAGAGAATATTTTGAAAGTGGACGTTAATGACATGATATGTAAATTGTGTCCTGCCAAACCTAAGGACTTAGTGGAATTGAAGCAACACCTCAACCTTGTTCACATGAAACCAGTGGATCCGGACCTTCACGATAATTTGATCCCGTTTAAATTGAACTCGGTAAATGGGCCCTACGAGTGTGTGGTGTGTAAGGAATCTTTCATCAAAGTGAGGACTCTGGTCATACACATGAGCGTTCACTTCAACAACTACAGCTGCGAGGTGTGCGGTTCAGGATTCATGACGTTGCGCCTTCTCAAGAAGCATCTGGAAGTGCACGAGACCGGGAACCATCCGTGCGACCTGTGCGAGAAGACATTCAGCACTGCGTACAAGAGGACTCTGCACATCCGCGGAGTTCATTTGAAGCAGTATCCTCGACGGTGTCCGCTCTGTTCCGAACGGTTCAACTCTAACTACAAACGTACTATCCACCTCCAAGACGTCCATAATCAGTCGACGAGGGTTCATAAATGTCAGACGTGTGGCAGAGGGTTCAATTTAAAGTATCATTTGATTTGTCATACACGATCTGTTCACATGCAAGAGCGGAACCAGCAGTGCGACGTGTGCCACCAGAGGTTCTGCAACAAGGAGACGTTGAAGCGGCACATGGTCATCCACACTGGGGAGAAGAACCACAAGTGCCACGTCTGCGGCATGGCCTTCCTGAGGAGAAAGAATCTCAAAGATCACTTACGACTGCACGATCTGGGACTCATCGAAGAGACAAATTcaacaataattgtaaaagaCGACGACGGCAGCGACATCAAACTCACATTATTAAAAAACCCAATCGCCCTGAACGACTTGGAGTGTCATTACGAAGAAAATGACGCcagtaataaaagaaaatataaccaagataaatttcaaaaaaataggAGGAGAGCGAGCATGGCCTTTCTAAAAGAACCAATATCGTTAGACAAAATAGATTGCGGCCCTGATAACAAGGCTATAACCTTTCACGTGAAGACAATACAAGGCGCGTGCCTCCGAGAAGTTACCAGAACAAAGACAAAGTCGGACCAGAAATGGAAAGAGAACGCGTTGACCATCTTCGAAAATTCTCTCGTCTACCCCTTCATACACGCAAGCAATAAATACAAGTGCTTTATTTGTTCCAAGCAATTTCTCGAAGCTACCTTGTTGAAAGAACATTCCCTAAACCACACCATTAAAGAAATGAGAGAGGAATTAAACAATCGAGTGAGAGATAAAAACATCAAAGTAGACGTAACTTATGCTCAGTGTAAATTGTGTTCAAAAACATTAccagattttaatacattaaaaatacatttaaaagaacACGGGAAGATACTCGATCCCAATTTCCAAGATAACCTCATTCCATTTAAGCTCGGCGGCGATAATTTCGAGTGCCAAGTGTGCGGGGAAAGGTATATGAAATTAAGATTACTGATAATCCACATGAGCAAGCACTTCAACAACTACAGCTGTGAGATCTGCGGGTCGGTGTTCATTTCCCTGACCTTGCTTAAGCGCCATCTGCAGACGCACGAGTCTGGGAACTTCCCTTGCGAGAAGTGCGACAAAGTGTTCACCAACTCGGCGAAACGGACTCTACACATGCGCGGCGTCCACCTGAAGCAGTTCCCACGACGCTGCCCCATCTGCCCGGAGCGGTTCAACTCCAACTACCAGAGGACGAAGCATCTGCGAATAGTGCACAACCAAACCACTGGCTTGTTCCGCTGCGAGACCTGTGGGAGAGAATACGATTTGAAATACCATTTGCTAGTCCACATTCGAGCAGTGCACTTGCAAGAACGGAACCAGGAGTGCCCCATTTGCCATTCCAGATTCTTTTCCAAGTACTGCCTCTCTCGACACATGGTGATACACACGGGCGAGAAGAATTTCAAATGCGATGTTTGCGGGAAGGCGTATTCCAGGAGGAAGAATTTGAGGGAACATTCTAGATCGCACGCGGGACATGTTTGCACCGTGTGCGGACAACACTTTAATGATCAAGCCAGTTTGATAGCACACGTCAATTCACATGGAGTTTTgtga
- Protein Sequence
- MDFSKLPPKRPPTPDSPRSASPLPESESMPPTPQTTPIHIPRPKHLKQGPDVRQNALIIFEFSTAYPFVYGNNKFKCFICSQPYLDLTILKQHMHDTHTFASLKRRVNNRRENILKVDVNDMICKLCPAKPKDLVELKQHLNLVHMKPVDPDLHDNLIPFKLNSVNGPYECVVCKESFIKVRTLVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHETGNHPCDLCEKTFSTAYKRTLHIRGVHLKQYPRRCPLCSERFNSNYKRTIHLQDVHNQSTRVHKCQTCGRGFNLKYHLICHTRSVHMQERNQQCDVCHQRFCNKETLKRHMVIHTGEKNHKCHVCGMAFLRRKNLKDHLRLHDLGLIEETNSTIIVKDDDGSDIKLTLLKNPIALNDLECHYEENDASNKRKYNQDKFQKNRRRASMAFLKEPISLDKIDCGPDNKAITFHVKTIQGACLREVTRTKTKSDQKWKENALTIFENSLVYPFIHASNKYKCFICSKQFLEATLLKEHSLNHTIKEMREELNNRVRDKNIKVDVTYAQCKLCSKTLPDFNTLKIHLKEHGKILDPNFQDNLIPFKLGGDNFECQVCGERYMKLRLLIIHMSKHFNNYSCEICGSVFISLTLLKRHLQTHESGNFPCEKCDKVFTNSAKRTLHMRGVHLKQFPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLVHIRAVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCDVCGKAYSRRKNLREHSRSHAGHVCTVCGQHFNDQASLIAHVNSHGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010603;
- 90% Identity
- iTF_00429231;
- 80% Identity
- -