Dpor022940.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220455.1
- Location
- LR999976.1:14381113-14400387[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.036 8.6e+02 -0.6 0.1 253 284 69 98 47 101 0.64 2 3 4e-79 9.4e-75 252.1 21.2 1 297 112 392 112 394 0.89 3 3 1 2.4e+04 -8.7 16.8 1 44 391 434 391 465 0.66
Sequence Information
- Coding Sequence
- ATGGGACAGCGATCGGAAGTGGCCACGCCTGATAACAGCGATGAGGAGAGCGGGGACGCCTTCACCGATGGGGACTTCGGAGATTCTGATGAGGACGTCGTCGAACGTAATGATACCACCTCCCACATACCCCTCAATGAGACTGTCAATCAAGATGTTACAACAGTTAATGGCAATGCCGCGCTGGATGATCCAAGTCCAGATAAATCTAAAATTAATGGACGGAGAACAAGTGAGAATCATACAGAGGATGAGGGGATTACGGACGTGAGAAGGGATTCACACGAACAAATACCTTCGATCGTTGGGATACTTGGAAACCAGCAGAATCACGCGGAACAGCGTCTGGCGGCGCGTCGAGCCGCGCGTGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAGCAAGAGGACCATGCAGACAAGGCCTACGATATGTATGCAGAGACGGTGGGGCGGCGCGGCGGCGGGCGGCTGGCGGTGCTCAGTCCCGGCGCCGTGCACTCCCCGCGCCGCAGCTCCGAGGACTCCGTCGATGACAGCTTCAACGTCAAGGATCTTAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCATGAGGAGTACGCGCAGCTGCAGCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGCCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGGCGCGGCGCGCGGGGCGGTGCGCGCGCGCGACGCGGCGGCGCACGCGGCCGGCTTCGCGTTCGTGGACGCCGCCACCAGCGACGCGCCGCCCGCCGCCGACGCCGCGCCGCCGCTCGCGCTCGTCAGCCACAGCGCGGAGCAGCTGCTCAACGATGCCGGGGAGGGGACGCTCGACGTGCGATTGCAGAAGCTGGTGAGCTCGAAGCAAGCGCTTGAGTCGGAGGTGCGCAAGCTGAAGCTCACGCTCAACGAGGAGCGCGCCGCCCGACACAATGGCGTCGCCAACCATCACGACCACCAATACGAGACCGAGCTGGAGACGCTGCGCAAGTGCGTGTCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCCACGGCGCGGCTCGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGACGCCGGCTGCAGAGAGAGGCAAGGGAAGCACTAAACAGAGTGGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAGCGGCTGGACAAGCTAAAGAACGCCAAGTCTGCGCTACTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDEDVVERNDTTSHIPLNETVNQDVTTVNGNAALDDPSPDKSKINGRRTSENHTEDEGITDVRRDSHEQIPSIVGILGNQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGGRLAVLSPGAVHSPRRSSEDSVDDSFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHASLEREVGAARGAVRARDAAAHAAGFAFVDAATSDAPPAADAAPPLALVSHSAEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLTLNEERAARHNGVANHHDHQYETELETLRKCVSEAKARAARAEAEAALQAAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_00820103;
- 80% Identity
- -