Delp009892.1
Basic Information
- Insect
- Deilephila elpenor
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_949752805.1
- Location
- OX457099.1:14311092-14329209[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.074 1.1e+03 -0.6 0.1 253 284 69 98 46 101 0.65 2 3 8.3e-79 1.2e-74 252.0 22.1 1 296 112 391 112 394 0.89 3 3 2 2.9e+04 -9.0 17.1 1 44 391 434 391 465 0.66
Sequence Information
- Coding Sequence
- ATGGGACAGCGATCGGAAATGGCCACGCCTGATAACAGCGATGAGGAGAGCGGGGACGCCTTCACCGATGGAGACTTCGGAGATTCTGATGAGGACGTCGTCGAACGTAATGATACCACCTCCCACATACCCCTCAATGAGACTGTCAATCAAGCTGTAACAACAGTTAATGGCAATGCCGCGCTGGATGATCCAAGTCCAGATAAATCTAAAATTAATGGACGGAGAACAAGTGAGAATCATACAGAGGATGAGGGGATTACGGACGTGAGAAGGGATTCACACGAGCAAATACCTTCCATCGTTGGGATACTTGGAAACCAGCAGAATCACGCGGAACAGCGTCTGGCGGCGCGTCGAGCCGCGCGTGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAGCAAGAGGACCATGCAGACAAGGCCTACGATATGTATGCAGagACGgtggggcggcgcggcggcgggcggctgGCGGCGCTCAGTCCCGGCGGCGTGCACTCCCCGCGCCGCAGCTCCGAGGACTCCGTCGATGACAGCTTCAACGTCAAGGATCTCAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCACTCGGATACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGTCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGgtgggcgcggcgcgcggggcggtgcGCGCGCGGGACGCGGCGGCGCACGCGGCCGGCTTCGCGTTCGTGGACGCCGCCACCAGCGACGCGCAGCCCGCCGACGACACCGCGCCGCCGCTCGCGCTCGTCAGCCACAGCGCGGAGCAGCTGCTCAACGATGCCGGGGAGGGGACGCTCGACGTGCGATTGCAGAAGCTGGTGAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTCACGCTCAACGAGGAGCGCGCCGCCCGACACAACGGCGTCGCCAACCACCACGACCACCAGTACGAGACCGAGCTGGAGACGCTGCGCAAGTGCGTGTCGGAGGCGAaggggcgggcggcgcgcgcggagGCGGAGGCGGCGCTGCAGGCGGCGGCCACGGCGCGGCTCGAGGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGACGCCGGCTGCAGAGAGAGGCAAGGGAGGCACTAAACAGAGTGGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAGCGGCTGGACAAGCTAAAGAACGCCAAGTCTGCGCTACTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEMATPDNSDEESGDAFTDGDFGDSDEDVVERNDTTSHIPLNETVNQAVTTVNGNAALDDPSPDKSKINGRRTSENHTEDEGITDVRRDSHEQIPSIVGILGNQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGGRLAALSPGGVHSPRRSSEDSVDDSFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHASLEREVGAARGAVRARDAAAHAAGFAFVDAATSDAQPADDTAPPLALVSHSAEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLTLNEERAARHNGVANHHDHQYETELETLRKCVSEAKGRAARAEAEAALQAAATARLEAQLQRLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_00820103;
- 80% Identity
- -