Dtri048688.1
Basic Information
- Insect
- Dasysyrphus tricinctus
- Gene Symbol
- -
- Assembly
- GCA_963921185.1
- Location
- OY992532.1:101028583-101032860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0021 0.57 12.8 0.3 1 23 115 138 115 138 0.95 2 14 0.0004 0.11 15.0 0.1 3 23 145 166 144 166 0.94 3 14 9.8e-06 0.0027 20.1 2.8 2 23 177 199 176 199 0.96 4 14 0.00011 0.031 16.8 2.4 2 23 246 268 245 268 0.96 5 14 0.00045 0.12 14.9 3.5 3 23 425 445 423 445 0.96 6 14 1.1e-05 0.0029 20.0 3.5 1 23 451 473 451 473 0.98 7 14 5.1e-05 0.014 17.9 2.4 1 23 479 501 479 502 0.96 8 14 5.3e-07 0.00015 24.1 1.1 2 23 515 536 515 536 0.97 9 14 0.00089 0.25 13.9 0.2 2 23 542 563 541 563 0.96 10 14 3.1e-06 0.00085 21.7 1.8 1 23 569 591 569 591 0.96 11 14 5.7e-05 0.016 17.7 3.2 1 21 597 617 597 619 0.94 12 14 8.6e-07 0.00024 23.4 0.8 1 23 625 647 625 647 0.96 13 14 2.3e-06 0.00064 22.1 3.0 1 23 653 675 653 675 0.99 14 14 2.5e-05 0.0068 18.8 0.1 1 23 680 703 680 703 0.90
Sequence Information
- Coding Sequence
- ATGGATTTCGATATCGAAAAAATGTGCAGGGTTTGTCTTAAAACCAATTTGGAGTCCGTATTGTTGTTCGAAGAGCCAAAGAAAATCGGTGGGGTCAGTATCTGCGACATGATTTCAGAACTAACAATTTATAAGGTCCACCGACATGATGATTTCCCACATCTTATATGCTATGAATGCATGGAACGAGTTGAAAGCGCTTATTCTTTCAAAAAGGACTTTGAACAATCTCATCGTAAACTTGTTACATATTTGGATTCAATCAATAAATACCAAGTAGTTGCTGATACAAAACCCATACCCACTGAGGAAAAAAGCACCCAAACCATAGATTCCACATTGTATCCATGCGAAAAGTGTGatcaaaaatttatcaaatatgAGCGTTTACGGGAACACCGAGCTATTGCACACAAAGGGTCGGCCAATCTGTGTCGAATATGTAATAAAGCATTCAACCGACTGGCTGGTTTAAAAAGTCATATTAGTGCCGCACATCCAGAAATTGGCTACCACAACTCGTCCAACCAGTGTTATGTTTGTAATAAAATGTTCACACGGAGAGATCATGTTACCCGTCACATAAGAAATGTCCACAAAATCGAAACTTCTGAAATTGCCCTTGGAATAGAAACAGCATTAATGGACAAAGATGGAGATCCTTCAAGCGAAATATTCGAAGAAGGAGAATGTAACGCAGATGGTGTAATAAAAGGAGAACCCAAGTCATTTGACGAATGTCTCGtttgttacaaacatttttcaagcaaaaacCGACTCAATCGTCACATGATGACCATTCACCAAATAGATACTACCCACATTCTCAAGCAGGAGCAAAATAATGAAATAAACACATTTGATAATGAATTGGAGTTGCTCGCTGAGCCTGAAGCATATAGAAACTACTCGAATGAAGATGATGGAGAGGTATCCAACGATTATGATAACGAAGGTGGTGTTGGTGGTGGGGATGAagatgatgacgatgacgagGAAGATGGTGACAATGATGATGGTTTAGACTCGGAAGAAGATGAAGCTTTTAAGAATACTGAATTTGTAGCGGCTAACAGTTTTATAAAATGTGAAACAGAAATAACGGAATTGCAAACTCCACAACCTGaagtggtaaataaaataacaattaaacaaGAAAAAGCTGAATTCAACATCACCGAAAGTATTTACACTCCTCCCAAGCAAGAAAAAGTTGCACCAAAAGAAACAACTTTTGATTGCTTCCACAAAATACAAGATGGAAAATACGGATGTAATTTGTGTGAGAAAACCTTTAAGTCTTCTTATCACGTCAAAAGACATTTCTTATCACACACCCAAGAAAAAGCATTCCAATGTACGTTGTGTGAGATGCGATTTAATAGAGCTGATCATCTGAAAAACCACATGACAAAACATAATCCAGTTAAGCCATTCCAATGTGATAGCTGCGGTGCAAGTTATGGTCGTGCAGATCACCTTAAACGGCACAGAGAAATGCATCATTCAAATGATCCAAATAGCACCCCAATAAAAGGCGAAGTTTGTGAATACTGTAATAAGTCATACAGTTCTAAAGCTTATCTACAAAAACATATGCTAAAGCACACAGAAAAATGTTGGAAATGTAAACTTTGCTCTGTTGTATTTGAAACTAGTGAAGCGCTAAAGGAACATGGCAAATCACACAGCAAAGATAAACCATTCCTGTGCTCAGAATGTGGTTTATGTTTCCCAAGGAAAAATTATCTTATTATTCATATGCGAAGGCACAATGGTGAACGGCCGtacaaatgtcaatattgcGATAAGGGTTTTCCACGTTCTACCGACTTGAAAGCACATGAAAAaTGTCATACTGGGGAGAAAACACACTTTTGCAACGTCTGCGGCAAAGGGTTTCCGCGACCATACAAATTGTCAGTACACATGCGAATTCATACCGGCGAAAAACCGTATCAGTGTATGCATTGTCCAAAGGCTTTTGCTCAGTGCAACGATTTGAAAGCGCATATTCGAAGGCACACTGGAGAGCGATTCAGATGTGAGATATGTGGGGCTggatttatacaaaaatacaatttgacaCAACACAAAGCTGATGCTCATGGCATTATAAATGAGTCTCGTTTAGGTCGAGTGGCCAAAATACCTATTGCCGAGCCAATTGGAGAGacTATGACACAAGTTTTAAATGATTCTGAAGAGGATAAATTGCAAATGGGGCTTACAACAAGCTTGATGTTTCGTGGTGTGGCGCttcattaa
- Protein Sequence
- MDFDIEKMCRVCLKTNLESVLLFEEPKKIGGVSICDMISELTIYKVHRHDDFPHLICYECMERVESAYSFKKDFEQSHRKLVTYLDSINKYQVVADTKPIPTEEKSTQTIDSTLYPCEKCDQKFIKYERLREHRAIAHKGSANLCRICNKAFNRLAGLKSHISAAHPEIGYHNSSNQCYVCNKMFTRRDHVTRHIRNVHKIETSEIALGIETALMDKDGDPSSEIFEEGECNADGVIKGEPKSFDECLVCYKHFSSKNRLNRHMMTIHQIDTTHILKQEQNNEINTFDNELELLAEPEAYRNYSNEDDGEVSNDYDNEGGVGGGDEDDDDDEEDGDNDDGLDSEEDEAFKNTEFVAANSFIKCETEITELQTPQPEVVNKITIKQEKAEFNITESIYTPPKQEKVAPKETTFDCFHKIQDGKYGCNLCEKTFKSSYHVKRHFLSHTQEKAFQCTLCEMRFNRADHLKNHMTKHNPVKPFQCDSCGASYGRADHLKRHREMHHSNDPNSTPIKGEVCEYCNKSYSSKAYLQKHMLKHTEKCWKCKLCSVVFETSEALKEHGKSHSKDKPFLCSECGLCFPRKNYLIIHMRRHNGERPYKCQYCDKGFPRSTDLKAHEKCHTGEKTHFCNVCGKGFPRPYKLSVHMRIHTGEKPYQCMHCPKAFAQCNDLKAHIRRHTGERFRCEICGAGFIQKYNLTQHKADAHGIINESRLGRVAKIPIAEPIGETMTQVLNDSEEDKLQMGLTTSLMFRGVALH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335287; iTF_00974968; iTF_00984445; iTF_00426547;
- 90% Identity
- iTF_00426547;
- 80% Identity
- -