Dalb009710.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000091.1:466705-471955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00039 0.058 14.9 0.3 2 23 64 85 63 85 0.97 2 17 0.25 37 6.0 5.0 1 23 91 114 91 114 0.89 3 17 0.00036 0.054 15.0 0.4 3 23 119 140 117 140 0.94 4 17 0.0037 0.55 11.8 0.1 2 21 149 168 148 169 0.92 5 17 0.00018 0.026 16.0 1.7 1 23 177 199 177 199 0.97 6 17 0.00011 0.016 16.6 2.2 1 23 205 227 205 227 0.97 7 17 0.0003 0.045 15.2 2.6 1 23 233 255 233 255 0.95 8 17 4.8 7.1e+02 2.0 5.5 3 22 263 282 261 282 0.92 9 17 0.051 7.6 8.2 2.7 1 23 574 597 574 597 0.98 10 17 1.1 1.7e+02 4.0 3.0 1 23 621 643 621 643 0.94 11 17 0.024 3.6 9.2 0.7 1 23 651 675 651 675 0.93 12 17 0.00011 0.017 16.6 0.9 1 23 679 701 679 701 0.98 13 17 0.0023 0.35 12.4 0.2 2 21 713 732 712 733 0.92 14 17 0.0045 0.67 11.5 0.2 3 23 743 763 741 763 0.92 15 17 8e-06 0.0012 20.2 1.6 1 23 769 792 769 792 0.97 16 17 3.7e-05 0.0056 18.1 0.2 1 23 798 820 798 820 0.98 17 17 0.002 0.3 12.6 1.6 1 21 826 846 826 847 0.95
Sequence Information
- Coding Sequence
- ATGAATATGCCTTCTGCACCAAACAGAAGAACAGAAAGAAGAATGAAAAAAAGAGAGCATGCTTTATCGCCATCGCCATGCCAACCATCTGTCGCATACTTCTTAGTTTCGCCAGTTGAGACAGAATCTCCTAGCGTCTCCTCTACAATGATGGTTCAAATAACAACCGACAAAACTGGACCAAAACTAGTATGCCCAGTGTGCGATAAGGCGCTTATCTCACTCCATGGCTATGTTAAGCACATGAAAAAACACGAACCACCTGGTGGTTACCTATGCAACTATTGTGATGATCGTTTTTGCCTCGAAGATCACCTCAAGAAACATAAAGATGAAAAACATAAAATCCTTGCATGCCAGATATGCCATGAGACTTTTGATTCGCCGCAAGATTATCGCACTCACATTAAAGATATTCACAAAGGCGTCGATCGACGAATGATCAAATGTGAAAAATGTGGCATGGAATTCAAAACGGCTCAAGCTGCAAAGAGGCACACTGAGACACAATGTGGTCAAATTAAGCCTCACCCATGTGATCAGTGTAAAATGGCATTTTATACAAAATACAATTTGGCAGAACACAAAAAGATTCACAGTGGGGAGAAAAAATTCTGCTGTAGCTACTGTGGCAAGAGTTTTATGAGTAATGGAAGATTAGTTATACATGAGAGGAGTCACACAGGCGAGAAGCCCTATAAGTGTGATGTGTGTGGAAAATGCTTTGCCCATCGTGAAAGCATCGTCACTCATTCCTCAATACATACCGGAGTCAAGCTGGTTGTATGTAAATGCTGTGGTTCAAGATTCTCTTGTCACTCGAATCTTATCAAACACAGACGAACAAGACCCGATACATGTGGCTTGGCAATTTATAACTCCACCAAAGAAACAAAACGAAACGGAAGCTCAAGAATTCCTCCGGGCCTGATGTCTTCTGAGATCAAAATTGTTCGAGCAAGCAAAGTTATAAAACCCAGCGAGGAACAAAAAAAGCCTAAGGCAGCCAATTCCAATGCAGAGCAAAAGAAGCCAAAAGTCCCCAAACCCAGAGCAAGATCCAAGAAAATCAAATCCGATTCAGAAGACGATGATGATAATGATGAAAGTGATGGCGAAGAAGTTATCATATCAAGACCAAGACGAAGTCTTCGTTCGAAGGAACCCGTTCCTATTGAAGAAATCGATAGTAAACCACCAGAATCACCCTCGAAAGACTTTGACTCAGACAATTATAGCGATGATCCATTATTTGATAGCCCAATGCACTCTGTTGATTCCTCCGATAGTGAAAAGCCAAAAGTAAAACCAGAACCCTTGGAAAAAATTACAATCGACGTTGATGCTTCAGATAATGGTCCAGTTAAAACCGAAGAAGACGAAAAGGGCGAGGATTTCTTTCAACAACAGGACGAAATTTTAGAAAAATTTCTATCCGAAAATACAGTCGATGTTAAATACGAACCGTTAGTTGAAATTAAAGAAGAATCAGAAGATGTAAAGAAAGATGAGATTCCGACGTGTGATGTGGTTCCTGCAGCTGAAAATGAAAAAAAGATTCCTACTAAGAGAACTAGGCGAAAGAAGCCAGAAGGTGTCCCCGCGGACGGCTCGATTGAAGAAAAGAATATGGACTTGGAAGAAGAGGATCATCCAAAAAAAAGACGGCAGCGTTCGGCGTTGCGTAAGAAACTTCGCTTCTTTAAAAAAGATCGAGTGTATGAATGCAAATTTTGTGCGAAGGTTTATCATATAAAGAAACCGTACGAAAAACATCTTCGGACCCTGCATAAACAGTCAGACAGTGAGCTGCGGGAATTATTCAAGGACGAAGATAATGACATTCCAGATGAATATGTGCATCGCTGTTCTATTTGTTCAAAAATCTATCTTATGGCTAAGCGACTGAAGACTCATATGACTTTCCATGGTCCCGATGGAAGTTTAATTCACAAATGTCCGGGATATTGCAAAATGTATTTCCGAACAAAAGAAGAAGCCATGGAACATGCCAAGGAAGCCCATAAAGAGTGTTTTTATTGTGACATCTGCGATAAGTATTCACAATCTCCGGATTCCCTAAAGATTCACAAACGGACTCACTTCGAGCAAAGGAGGCAAGCAAATCGCAATTTGATATGTGATAAATGTGCCAAGTCTTTTGCAAGTCGGACATCTCTTAACGATCATTCGAGGTCAAATTGTGGAAAGGATCCCCTCTATGGGTGTGATATTTGTGATAAGAAATTCAGCACAGCTGGAATTTTAAAGACACATTCTTTGTTGCACAAGGATGAAACGCCTTATGCTTGTGATAAGTGTGGAAAGACATTTAAAATTAAAGCCCAGTATAAGACACACATTAAGATGAAGCACACCGATAATAAACCTTTCAAGTGCGAGCTCTGCCCTAAAGCATATCCCTATCGAGAAAGCCTCTTAACACACATGACAGTTCATACAGGGCTCAAGCGTTATTCATGCAATGGATGTAGCAAACGGTTCACTTGCATATCGAATCTTCAAGCTCATCGCAAAGTTTATGCTGATACTTGTGGATTACAGCCGTTAAATTCAAAACCAAGCACTTATTTAGGTGTGCAGAAGGGCCAACTTCTCATGGGAACAAAACCTTCTTATTAG
- Protein Sequence
- MNMPSAPNRRTERRMKKREHALSPSPCQPSVAYFLVSPVETESPSVSSTMMVQITTDKTGPKLVCPVCDKALISLHGYVKHMKKHEPPGGYLCNYCDDRFCLEDHLKKHKDEKHKILACQICHETFDSPQDYRTHIKDIHKGVDRRMIKCEKCGMEFKTAQAAKRHTETQCGQIKPHPCDQCKMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFMSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLAIYNSTKETKRNGSSRIPPGLMSSEIKIVRASKVIKPSEEQKKPKAANSNAEQKKPKVPKPRARSKKIKSDSEDDDDNDESDGEEVIISRPRRSLRSKEPVPIEEIDSKPPESPSKDFDSDNYSDDPLFDSPMHSVDSSDSEKPKVKPEPLEKITIDVDASDNGPVKTEEDEKGEDFFQQQDEILEKFLSENTVDVKYEPLVEIKEESEDVKKDEIPTCDVVPAAENEKKIPTKRTRRKKPEGVPADGSIEEKNMDLEEEDHPKKRRQRSALRKKLRFFKKDRVYECKFCAKVYHIKKPYEKHLRTLHKQSDSELRELFKDEDNDIPDEYVHRCSICSKIYLMAKRLKTHMTFHGPDGSLIHKCPGYCKMYFRTKEEAMEHAKEAHKECFYCDICDKYSQSPDSLKIHKRTHFEQRRQANRNLICDKCAKSFASRTSLNDHSRSNCGKDPLYGCDICDKKFSTAGILKTHSLLHKDETPYACDKCGKTFKIKAQYKTHIKMKHTDNKPFKCELCPKAYPYRESLLTHMTVHTGLKRYSCNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGQLLMGTKPSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01357262;
- 90% Identity
- iTF_00335299;
- 80% Identity
- -