Basic Information

Gene Symbol
Zfa
Assembly
GCA_963555695.1
Location
OY743153.1:8203610-8213892[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.011 1.8 10.9 1.6 3 23 646 667 645 667 0.96
2 23 0.24 39 6.7 0.3 1 22 1052 1073 1052 1073 0.95
3 23 8.8 1.4e+03 1.8 0.4 1 22 1115 1136 1115 1138 0.82
4 23 0.019 3 10.1 4.8 2 22 1148 1168 1147 1168 0.93
5 23 2.5 4e+02 3.5 0.0 3 23 1177 1198 1175 1198 0.89
6 23 0.021 3.2 10.0 0.2 3 23 1219 1240 1217 1240 0.96
7 23 0.0039 0.61 12.3 2.5 1 23 1246 1269 1246 1269 0.95
8 23 0.15 23 7.4 0.0 1 23 1295 1318 1295 1318 0.90
9 23 0.022 3.5 10.0 3.4 1 23 1323 1345 1323 1345 0.97
10 23 0.01 1.6 11.0 0.2 1 23 1351 1374 1351 1374 0.95
11 23 0.0047 0.74 12.1 0.8 1 23 1387 1409 1387 1409 0.97
12 23 0.00021 0.033 16.3 1.8 1 23 1459 1482 1459 1482 0.97
13 23 0.0031 0.49 12.6 0.9 1 23 1542 1565 1542 1565 0.95
14 23 0.0028 0.44 12.8 2.1 2 23 1592 1614 1591 1614 0.95
15 23 0.046 7.3 8.9 0.1 2 23 1620 1642 1619 1642 0.94
16 23 0.012 1.8 10.8 0.2 1 21 1686 1706 1686 1707 0.95
17 23 0.00049 0.078 15.1 1.0 1 23 1717 1739 1717 1739 0.93
18 23 0.00013 0.021 17.0 0.3 2 23 1832 1854 1832 1854 0.93
19 23 2.6e-07 4.1e-05 25.4 1.4 3 23 1861 1881 1860 1881 0.98
20 23 0.026 4.1 9.7 0.3 1 23 1899 1921 1899 1922 0.95
21 23 0.22 34 6.8 0.0 1 23 1945 1967 1945 1967 0.97
22 23 0.032 5.1 9.4 0.6 1 23 1973 1996 1973 1996 0.95
23 23 0.0003 0.047 15.8 0.4 1 23 2004 2027 2004 2027 0.96

Sequence Information

Coding Sequence
ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATACACGAAAATGACGACCTGCCTACTAATGTCTGCAGGAAATGCATGGAAAATGTCAATAACTGGCATGTTTTTAAAAAAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTAAAAGATGGCAGCCAACTAGAAGAGgtgaaaataaaaagtgaaccaCTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCACTGAGaATGCTGGCTTTTCAAACAAAGTGCAACCTGAAGGTCCCCCAATCTTGGCTTCGTTGGGGCTCACACCAAGAAGTGATAAGAAATGTGTGGACCCGCGAATGGATTGGCATCGGGTCCATGCAATTTTGGACATGGTTCAAGACAATGAGGTGATTGACTCTCTGCAGACAAAGGAAGTGTGTGATGTCTTGCAGCATTCTGATCATAACTCGGACTCAGAAGCCGAACTCCAACCAGAAATTGATGATGATTACGTTGATTGCAAAAACGGTtacatttgcaaaaataaaaatgttatatcAAAAGTTCCAAAACTATCAACTTCTGTAAATAATGCCAGAGTCAAAAAAGCTTTCAAACTTAGAAAACGTAAATCTGAAGTTCGGAAACATTGTTCACGACCTAAAAATGCGTGGCAGTTGTTATTCACCGATGACCTACTAGAATTGATTGTTGCTTCTACTAATGACAATATTGGGACAAATAGGAAAAGTTTCACAGACTCAACTAGTGTCAGCGAAATTAAAACGCTTATCGGTATTCTGTATTTGCACGGCATAATGCGGCCGACGCATCAGAAATCTAGTGACCTTTGGAACAGTGAATGTGGTGTTCCATGCGTCAGAAATGTCATGAAATACGAAAGGTTCAAATTCCTGCTTCAAAACATGAGCTTCGATAAGGAGGACGACGACAGCATTATACAGTTCGACATAATGAAGCGTATGCGTAAAGTATTCGAAATCTTCGCCATGAATTGCAGAACATCTTACGAGATTGAGAATGTCGCGGTTATTGATGAGATCATCGTGCCAGTTTACGGACCTTGCCCATTTCGATACGATATTGATAAGAAGCCGCTGAAGCGGGGCATAAAACTGGTATTGCTAGTTGATTCATCCACATTCTATATGAGCAATTTAGACGTCATTACTGATCCTTATTTTGGCGCCGAAGAGATAACGAAAAAGTTGGTTCAGCATTTAGCTGGAACTGGCAGATCTATTGTTATGGACAGTTGGTTCACATCTCCCTCATTGATGGATAGCCTTAGAAATGAGTACCAGTTGTATTCTATTGCAGCCTTGAACCCAAGCAGTGATATGATTCCGCCACTATTCCTATCTCAATACAGGAAATGTCGAACATTCATGTCTGGATTTATTGATCATGAAGTATCACTGACATCTTATGTCAACACTGAGGGAAAATCTGTGAATGTATTGACGAATGAGCCTAGATATTACAGGAAAGGTCATATAAATCACACTACCGTTGTATCCGTATATAAGAAGAATCAGTCTGCTGTAGAAGTTGTGGATGTTCTCATGAATTACTACACTACAATGCAACACACCAATGATTGGACACTGTCCTTATTCTTTACATTGCTGAATATTGCATCTGGTGCGGAGAGTGAAAACAATGAAGAAGACGAGGAAGAAATGAACGAGCCCGCACAAAATTTCCCGAAAATGCCCCACATGCCCGAGGTGTCCATCACGGTGATGAGGCCTACTGGTGAAACTTTGCACGCTCGCCAAGGTATTCACCAACTCGCTTCCAAACTGTGCCTCGTCTGCGGCCGCTCCTACAGGTACTCCCACAACGCACGCAGACATGAACTTACCTCTCACAGCTTCGATagatatacaaacaaaattactccAAAAAAAACCCTCAATCATCTACAACCCAAACTCAGACCGAATCCATTCAACCCCAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGATGCAGCTCTTTAACAAGAACATGCCAACAAAAATAATGCCCATAAACAAAGTTATAACGCCACAGAAACCCATTCCAATAAAGACGTCAaagacacaaaataatttgcctTATCCTCTACGCATTAAAGCACTCAAAGATTTACAAATTAAGAAAAAGGAGCCTCAGATTCTAAAGACTTTGTTAACCTCTAAACCTGAAGTTCTGGTTTCCGAACCAGAAATTCTTAATTCTGGGCCTGAAAGTCCAGAAACATTGATATCTGAGCCTGAAATTGCGTCTTTTCAAGTCGAAGCTATTCTTACGGAACCCGATGCAGATGCATACGATGATCCACAGCAAGGCGACGAAGAAGTTGATGAAGAAATACAGAACAATCAAAGTCAAAACTATGACACAGTAGATATGGACTCTGAGAATGAAATAGAGATTGCTCGTCAGCACGGCATTGAACACGAAGTTGAGGAAAATGCTGATGGGGAAGAGAATATCGACCATGATGACGATATTAACATGGAAGGCGTTCAGAGCGATAACGAGAAAGACGACAATGACGATACGGTTGAGAGTCAAGAGAACATGGAAGAAGAAGATAGTGTTGATATTAAACCTGAAGACCAAATGAAAGATGACGAAGAGATTCAAGAGGAGAGAGAACACGAAGAATTAGAAATAAATCACAACCAAAACGAGGAAGAAGAGGATGATGACCTTCCAATATCATTAGCGCCCGTCGTCGAAATAAGTGAGGGATTGCAAGCCGACTCATTTAACAGCGAAGTCAATGAAGAAGACGAGCAAGTCGATGTAACTGCCGATACAAGTGAAATCGTTGAAGAAGAGGAGCTGGTCAAAGAACTTGACCCTGACAAAACATATGTTACGAAAACCCAAAGAGACTTCATCCAGAAGTATCGCGACATCATTCAGCAAATCAACACGAAGCGTTGTTTATGTTGCGATCGAGAACATCCGCGCAGAAAAGCTGTTATACAACACTTGCAGAAAAACGGACATAAGGTACCAAAACACACTTGTTACAACTGTGTCATCACATTTGGACATATTGGCGCTCTACTCAGTCATATGAGGTCGAACTCTTGCACTAATTTGTGGAAGATTATTTACAATGAAAATGGCATTACTGACGACTTAATTCTCGAAGATGAACCGAAAGAGGTTAAGGTTGCTTACAAAGATATTTTCAATGCCAGGTCATACGCTTGCAAGCTCTGCCCAGCAAAATTTCAACTGAAACAGTTTATTATGAAGCATGTTTTGGATACTCACGAGGATGGACAGTCTAGGGTACCACTTTGTTGTGTCCACTGCCGTTCTAGGTTCAAAGATAAGAGCTTACTAAAGAAACACATTCGTAAAGGTGATTGTACAGTTTATATTGCTTGCGATTTATGTTCAGAAAAGTTCGGGAACATGCAGGACTTTAACGACCATGCACTAGCTATCCACGCTGGCAGTTTCGATCAGTCGGATAATCAGAGCAAATGTGTTGACGGTCGGCCTACAGACTGTCCTTTGTGCGGAAAGAAAAACAGCAGCTATCCGAATTTAGTGAAACATTTGAAAATTATACATGCAGAGGAGAAACCTCACTACTGCCAGCATTGCGACGCTAAATACGAACAAGCTACTGATCTGAACAAACACATTTACATGGAACATTCTGACAGAACATTAGGCATGACGCCCGCTGAACCGGATATGTCCATAGTTAAGGAAGAAGCAGAGGAGTACCATTACTCCTGTACGGAATGTAATGCCATATTCGAAACTGTTGATGCGTGGACTGATCACCAAGTCGCCGAACATAACCAAGTGGCCCACCACTGCGACCAGTGTGAGAAGAAATTCCTTCGTCCTTCAGAGCTGGCAGAGCACAAGAACACTCACTTGAGGGTTAAATTCTATCCTTGCAGTGTATGCCCTAACTCTTACAGCACTCCACAAAAACTGTCTGAGCATGTGCAGCAGTCACATCCAGGAATTGGTGCAGTCGCGGCAACTGAGTCGGAATTTTTCTGCGACATCTGTATCAGAGCATTCAAAAGTCGTCAAGCTTACTCAAATCATATGCGTATTCACGCTAAAGTACCTACTACTAACAGGAAACCAGTTCCAGGTAAAGAGGGATTTGCACCTCAAATTATCGGGAAACCTATTAAACAGTATCCCATGGTTCAACCTGGTTTTGTGTCATTTAAACCTAATTACAACATCCCTAACGCTCCATATTCATGTGATATTTGTGGTAAAGGATTCATGCATAAGAAGAATATATGGAAACACAAGAAAGTGTTGCATGCCGATATTTTAGTCGATAGACATGACAGTGAAGAGAACACCATGCAAGCTTCCACAGAAGAGGAGGAATTCAACCCTGATGAAAATGGTGCCATTCTCTCAACGCCACAGTTTGATAGTTTTAACTTTTCAAACTTCCCGAACAATGCTCAACAAACGCCACCAGATACAATGGCTTATGCGTGTGATTTATGCAGCAAACGGTTCCCGCTAAGGACCAGTTTATGGAAACACAAGCGCGCTAAACATGGAATCGTAAACCCAAGCGCTAGTAGTAGCAATGACACATCCACGCCGTCCGCTGGTGGGGAAGGCAGTAGTAGATCAAGCTGCACTATATGTAGAATCACATTTTCagataaaaaatcttattatcGTCATCGAAAGAATGTCCACAAATCTACCGTTCAAATGTGCAAAATATGTGGCAAACCGCTAAGTTCAACTCTGGAACTATACGAGCACTTGAAAGCCGCTCATGCAAGAGAACTACTGGGTTATAACGCTAACCAAGGCTCCAGTAAATCACAAGATATGTCCCAAGAGATAGAACCCGATTATGAAAATGATCAGGAGTCTGTCGACCCCAGCGTCGATTACCAAGCGCGCTACCCGTGTGATACTTGTGGCAAACAATTTGTAGGTTTGCTAGCGTTGCAAAACCACCAGTGCATCAATCAAATACAATCACAACCACAGACGTTTGACTGCGAAATTTGTCACAAGAGCTACACTTCAATATCTGCGCTAAAAAGCCATCGTGGGTGGCATTTACGTTCGCCCGATGGAAAAGCAGCAGCCAACAATTCAGGCCTATGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGCAAACATGAGGTCATCGATCCGTCACAACTTGCTAAGGTCACACATACCCCCACTCCCCCTCCTGTCACTGCTACCGCAGCAAAAAGAAGACTACCTCCAGAGGTTGAAGTGACAGTCGTAAATCCAAACAAGAAACTGCGCTCAGACGACTCGGTCGACCTGGATATGCAAAGTACTGGTGCAATCGAGGATAGGTACTGTACGATTTGCGACAAGGAATTTACAAAACGCGCGGCGTATCAGCGCCACATGGACGAGGTACATCAACCGAACTCTGTGTTTTGCCCGATCTGTGATAAGAGTTTTACAAGGAAATCCACATTGCTCATTCACATGAAGAAACACTATGAGAGTGGTGAGGGCAGTTCCTCTGCTACAGGTCAAGGGGACGATGATTACTCCTGTGATTTGTGTGGCGCTCAGTATGACAATGATCAGGCGTTGAGGGCGCACCGGGCGCGGCACCATGGAGAAGATGAAGAGTCGGCAGAAGAGAGCGACGACGGAAATGTTCCTATTGCTCCTCCCGGTGAGTTCACATGTGCGCAATGCGGCGATGGCGTGGCTACACCAAGAGACCTCATCGCCCATCGCACAATGCACGCTACTCCCACCAAATTCTTCTGTAACATATGCAAAGTGTACTTCGCTCGGGCGCTCGACCTCTCCTCGCACACTCGGGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCCTGTGCCATGTGCGACAGGTTTTACATGAACAAAAAGAGTTTACAGCGACACATCGAGATGGCTCACTGA
Protein Sequence
MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVQIHENDDLPTNVCRKCMENVNNWHVFKKVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVTENAGFSNKVQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQDNEVIDSLQTKEVCDVLQHSDHNSDSEAELQPEIDDDYVDCKNGYICKNKNVISKVPKLSTSVNNARVKKAFKLRKRKSEVRKHCSRPKNAWQLLFTDDLLELIVASTNDNIGTNRKSFTDSTSVSEIKTLIGILYLHGIMRPTHQKSSDLWNSECGVPCVRNVMKYERFKFLLQNMSFDKEDDDSIIQFDIMKRMRKVFEIFAMNCRTSYEIENVAVIDEIIVPVYGPCPFRYDIDKKPLKRGIKLVLLVDSSTFYMSNLDVITDPYFGAEEITKKLVQHLAGTGRSIVMDSWFTSPSLMDSLRNEYQLYSIAALNPSSDMIPPLFLSQYRKCRTFMSGFIDHEVSLTSYVNTEGKSVNVLTNEPRYYRKGHINHTTVVSVYKKNQSAVEVVDVLMNYYTTMQHTNDWTLSLFFTLLNIASGAESENNEEDEEEMNEPAQNFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHSFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQLFNKNMPTKIMPINKVITPQKPIPIKTSKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYDDPQQGDEEVDEEIQNNQSQNYDTVDMDSENEIEIARQHGIEHEVEENADGEENIDHDDDINMEGVQSDNEKDDNDDTVESQENMEEEDSVDIKPEDQMKDDEEIQEEREHEELEINHNQNEEEEDDDLPISLAPVVEISEGLQADSFNSEVNEEDEQVDVTADTSEIVEEEELVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLILEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLCCVHCRSRFKDKSLLKKHIRKGDCTVYIACDLCSEKFGNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDAKYEQATDLNKHIYMEHSDRTLGMTPAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAATESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPVPGKEGFAPQIIGKPIKQYPMVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAILSTPQFDSFNFSNFPNNAQQTPPDTMAYACDLCSKRFPLRTSLWKHKRAKHGIVNPSASSSNDTSTPSAGGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDMSQEIEPDYENDQESVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTPTPPPVTATAAKRRLPPEVEVTVVNPNKKLRSDDSVDLDMQSTGAIEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPICDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDYSCDLCGAQYDNDQALRAHRARHHGEDEESAEESDDGNVPIAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
iTF_00758469;
80% Identity
-