Basic Information

Insect: Dascillus cervinus
Gene Symbol: -
Assembly: GCA_949768715.1
Location: OX458320.1:26430537-26434037[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.4 2.6e+03 -0.3 0.0 23 44 172 193 165 198 0.87

2 17 0.00058 3.8 8.8 0.0 21 52 198 229 195 231 0.88

3 17 0.3 2e+03 0.1 0.0 22 45 227 250 222 258 0.85

4 17 1 6.9e+03 -1.6 0.0 21 43 254 276 250 286 0.79

5 17 0.54 3.5e+03 -0.7 0.0 21 48 282 309 277 314 0.76

6 17 0.0055 37 5.7 0.0 21 45 338 362 335 369 0.90

7 17 0.088 5.8e+02 1.8 0.0 21 45 366 390 363 397 0.87

8 17 0.078 5.2e+02 2.0 0.1 22 43 395 416 392 424 0.85

9 17 1.8 1.2e+04 -2.3 0.0 22 48 423 449 420 453 0.76

10 17 0.098 6.5e+02 1.7 0.0 21 46 450 474 446 481 0.80

11 17 0.31 2.1e+03 0.1 0.0 21 44 477 500 474 505 0.86

12 17 0.0013 8.6 7.7 0.1 21 52 505 536 498 538 0.88

13 17 0.42 2.8e+03 -0.4 0.1 21 44 533 556 531 564 0.79

14 17 1.7 1.1e+04 -2.3 0.1 32 44 572 584 553 587 0.62

15 17 0.0057 38 5.6 0.0 21 45 617 641 613 644 0.90

16 17 0.00024 1.6 10.0 0.1 21 44 645 668 640 678 0.85

17 17 0.98 6.5e+03 -1.5 0.0 22 44 674 696 670 699 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.4	2.6e+03	-0.3	0.0	23	44	172	193	165	198	0.87
2	17	0.00058	3.8	8.8	0.0	21	52	198	229	195	231	0.88
3	17	0.3	2e+03	0.1	0.0	22	45	227	250	222	258	0.85
4	17	1	6.9e+03	-1.6	0.0	21	43	254	276	250	286	0.79
5	17	0.54	3.5e+03	-0.7	0.0	21	48	282	309	277	314	0.76
6	17	0.0055	37	5.7	0.0	21	45	338	362	335	369	0.90
7	17	0.088	5.8e+02	1.8	0.0	21	45	366	390	363	397	0.87
8	17	0.078	5.2e+02	2.0	0.1	22	43	395	416	392	424	0.85
9	17	1.8	1.2e+04	-2.3	0.0	22	48	423	449	420	453	0.76
10	17	0.098	6.5e+02	1.7	0.0	21	46	450	474	446	481	0.80
11	17	0.31	2.1e+03	0.1	0.0	21	44	477	500	474	505	0.86
12	17	0.0013	8.6	7.7	0.1	21	52	505	536	498	538	0.88
13	17	0.42	2.8e+03	-0.4	0.1	21	44	533	556	531	564	0.79
14	17	1.7	1.1e+04	-2.3	0.1	32	44	572	584	553	587	0.62
15	17	0.0057	38	5.6	0.0	21	45	617	641	613	644	0.90
16	17	0.00024	1.6	10.0	0.1	21	44	645	668	640	678	0.85
17	17	0.98	6.5e+03	-1.5	0.0	22	44	674	696	670	699	0.85

Sequence Information

Coding Sequence: ATGAAGGGGCTGGATATCCTTTGGAACGGACTGGATGAGCTGGAGGCACCAACGAGGTTGGATGAACTGGAGTTAAAGATGGAGCCTTACGATTCAGTTAAACTCAAAATTGAAGAACTGGTTGTAAAAGATGAATACGCAACAGCTGTCGAAGAAGACGATTTCGAATCCAACCCCAAATTTCCTGCAGTTTGCACTGATGATTTTACCGTTGCAAAGGTCAAAGCCGAACCCTCACAAAATTCGAACGAATTCAGTTATGAACTGCAAACTAACCTAAAAGAAGAAGGTTGGAATGAAGAACCTATCAACCAACCCTCCTTTTCCAACTGCAACcaagaagaaattaaaatagaaaacTGTGAACTAAATTTCGATTCACCACTTACATCGTTCCTGGAAGTAACCAAACAAGAATGCGGTGAGTGCGGAAACTGTTTCTCTGATAATTACCAACTTGAAGAGCACTTGCTAACCCACACGTTTGAGTGCCCCAAAACAGTTGCAGGCGATGGACCATTTAAATGCAACCAATGCAACAAAGTTTGCTCGCTAAAAAGCAACCTAAAACAGCACATGTTGGTTCACACGAAAGAGAAACCCTTCAAATGCGATTTGTGCAGTAAAGCGTTCAATCAAAGCGGGAATCTTAAAATGCACATGTCAGTGCACACGGGccagaaaccttttaaatgcaatTTGTGCAATAAAGCCTTCACTCAAAAGGGCAGTCTCAAATTGCACTTGCTTGTCCATAAAGGGGAGCAACCCTTCAAATGCGGCGAGTGTGACAAGGGTTTTACGACAAAGGGAAATCTAAAGCTGCACACGTTGATTCATTCCGACGAGAAACCCTTCAAATGCCAACTGTGTAATAAAGCTTTTGTCCACAACAGTGCCCTCAAAAACCACGTTTTAGTCCACGAGGGCACGAAGCCTTTCAAGTGCCATTTATGCGATAAAACTTTCACCCTCATTCGGAGTCTCAATGTGCACATATTAGCCCATACAGGCGAGAAACCTAATATGTGCAATGTGTGCAATAAAGGTTTCACAGACGCGAGCAATCTCAACCGACATATGTTCATACATTCGGGcgagagacctttcaaatgtgGACAGTGTGACAAGGCCTTTATAACAAAGCGCAATCTAAAAGAACACATGTATATTCATAATGGGGAGAGAACCTTTCAGTGCAATGTGtgcaataaaagtttcaaacaaACTCGCAGCCTCAATGAACACAAATTGATCCACAAGGATGAAAAAACGTTCAAATGCCATTTGTGTGATCAAGGCTTCAATCATAACAACAGCCTCAGAATTCACTTGTTGGTCCATAAAGGCGAGAAACCTTTTAAGTGCAATGTGTGCAACAAGGCTTTTACTCAAAATGTGCTCAAACGGCACATGTTGGTTCACAGTGGAGAGAAGCCTTTTAAATGTGAAGTTTGCAACAAAGCCTTCACCGGAAAAGGCAACCTAGGTAAACACATGTTGACCCACACGGGCGAAAAACCCTACAAATGCAATGTGTGTGACAAGACTTTTCAACAAAACCGCAGTCTCAGTGTGCACTTGTTGGTTCATAAGGGCGAGAAACCTTGCATATGCCACGTGTGCGGGAAAACGTTCACGCACGCCATCTACCTCAAAACGCACATGTTAGTTCATCAAGCggaaaaaatcttcaaatgtGACCAGTGTGATAGGGGTTTTACTCGAAGGCACGTCTTCAGAAGACACCTGTTGGTCCATGAAGGAGAGAAAACCTTCCAATGTGCCATGTGTGATAAAGCGTTTGTGCTCGACAGCCAACTCAAGAGACATGTGTTGGTTCACAGTGATGAGAGACCGTTTAAGTGCCACTTGTGTGATAAGGCGTTTAGAGAAACTCGTACTCTGAAAGCGCACATGTCTGTTCATACCGGCGAGAAACCCTATACATGCAATGTGTGCAATAACATTTTCACGGCAAAACGCAGTCTCAGATTGCACATGTTGTCCCATAAGGACAAGAAACCTTTTAAGTGCCACTTGTGTGATAAAGGTTACACGCAAAAGAAGAGACTCAAAACTCACATGTTGGTTCATAAGGATGAAGAATCgtttgagtgcaaagatgaGCCGATTTTATAA
Protein Sequence: MKGLDILWNGLDELEAPTRLDELELKMEPYDSVKLKIEELVVKDEYATAVEEDDFESNPKFPAVCTDDFTVAKVKAEPSQNSNEFSYELQTNLKEEGWNEEPINQPSFSNCNQEEIKIENCELNFDSPLTSFLEVTKQECGECGNCFSDNYQLEEHLLTHTFECPKTVAGDGPFKCNQCNKVCSLKSNLKQHMLVHTKEKPFKCDLCSKAFNQSGNLKMHMSVHTGQKPFKCNLCNKAFTQKGSLKLHLLVHKGEQPFKCGECDKGFTTKGNLKLHTLIHSDEKPFKCQLCNKAFVHNSALKNHVLVHEGTKPFKCHLCDKTFTLIRSLNVHILAHTGEKPNMCNVCNKGFTDASNLNRHMFIHSGERPFKCGQCDKAFITKRNLKEHMYIHNGERTFQCNVCNKSFKQTRSLNEHKLIHKDEKTFKCHLCDQGFNHNNSLRIHLLVHKGEKPFKCNVCNKAFTQNVLKRHMLVHSGEKPFKCEVCNKAFTGKGNLGKHMLTHTGEKPYKCNVCDKTFQQNRSLSVHLLVHKGEKPCICHVCGKTFTHAIYLKTHMLVHQAEKIFKCDQCDRGFTRRHVFRRHLLVHEGEKTFQCAMCDKAFVLDSQLKRHVLVHSDERPFKCHLCDKAFRETRTLKAHMSVHTGEKPYTCNVCNNIFTAKRSLRLHMLSHKDKKPFKCHLCDKGYTQKKRLKTHMLVHKDEESFECKDEPIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00422854;
90% Identity: iTF_00422854;
80% Identity: iTF_00422854;