Dcer021681.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dascillus cervinus
Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458320.1:26425593-26429798[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0048 32 5.9 0.0 23 45 166 188 157 196 0.88
2 16 0.79 5.3e+03 -1.2 0.0 21 44 192 215 189 220 0.84
3 16 2.9 1.9e+04 -3.1 0.0 22 44 249 271 247 274 0.74
4 16 0.072 4.8e+02 2.1 0.0 21 45 304 328 302 335 0.87
5 16 1.3 8.5e+03 -1.9 0.0 23 51 390 418 387 421 0.80
6 16 6.8e-05 0.45 11.8 0.1 21 47 444 470 441 475 0.85
7 16 0.0043 28 6.0 0.0 21 46 472 497 469 503 0.91
8 16 0.16 1.1e+03 1.0 0.0 26 43 505 522 498 531 0.85
9 16 0.54 3.5e+03 -0.7 0.0 22 51 529 558 525 561 0.82
10 16 0.41 2.7e+03 -0.3 0.0 21 44 556 578 553 586 0.81
11 16 1.1 7.5e+03 -1.7 0.0 21 44 583 606 578 610 0.83
12 16 0.0015 10 7.5 0.1 21 52 611 642 608 644 0.88
13 16 0.67 4.4e+03 -1.0 0.0 21 43 639 661 637 664 0.76
14 16 0.0042 28 6.0 0.1 21 47 723 749 720 755 0.85
15 16 0.56 3.7e+03 -0.8 0.0 21 44 751 774 748 783 0.79
16 16 0.32 2.1e+03 0.0 0.0 21 44 779 802 771 806 0.88

Sequence Information

Coding Sequence
ATGGATAATTGTGATTCAGTTCAATTCAAACCTGAAGGGGAAGCTGTCATTATAAAAGATGAATTTGATACTGCtgaaaattttgttgcaatttttgaaGAGGATCTTGCCATTAAAGCACAggTCAAAACTGAACCATCTCAATACAATGATGAATTCAATAATCTTTCCGATGACACAGTTACACCAACAATAAGCAATTATGAATTCCAGGCGAATTTAAAACAAGAAGATTGGAGGGAAGATTACATCGGCCAACATCCTTTCACTACGACCTCAAACCAAgacgaaattaaaatcgaaaagTGCGAACTAAACTTCGACTTAATTTCACCAGACGAGTTTCTCAAAGTAGCAAAGCTCGAGTGTGGCGAATGTGGAAGCTGTTTCGCCGACAATGACCAACTTGAAGAACATCTACGAATCCACACTCTTGACAGGCCAAAACGCAACCGAAAAACAAAGGTCAAAACAGATATGGTTGCTTATGAAGGCAGGCCCTTTAAATGCGACGTTTGCAATAAAGCCTTCACTCAAAGTGGCAATCTCAAAACGCACATGTTCGTTCATAAGGCagaaaaaaacttcaaatgcAATGAGTGCAATAAAGCTTTCGCGCAAAAGGCCAACCTTAAATATCACATGTTGGTACATAAAGGAGAGACTCCGTTTAAATGCACCGAGTGCAATAAAGGTTTCACGGCCAAGTGCAATCTCAACTTGCACATGTTCACTCACACCGGTGAGAAACCTTTCAAGTGCCAACTGTGCAATAAATCTTTCGTCCATAACGGCGCCCTCAAAAGCCACATGTCAGTTCACGAGCGCAAGATGGCCTTCAAGTGCCACTTATGTGATAAAAGGTTCACCTTTAATAGCAGTCTCAAATTCCACATTTTGGTTCATAAAGGCGAgaaaccctttaaatgcaaCGAGTGCAATAAAGCTTTTATTCATAAGCGCAATCTCAACTATCATCTGTTGGTTCATAAAGGAGAGACACCGTTTAAATGCCATGAGTGCGGTAAGGGTTTTATAACGAAGAGCAACTTGAAAGTGCACGTTTTGAGTCATACCGGCGATAAACCCTTTAAGTGCCAACTGTGCGACAAACAATTTATCCATAAAATCGCTTTCAGCAATCACTTGTTGGTGCATGAGGGCAAAAAGCCTTTCGCGTGCCACTTGTGTGACAAAACTTTCACCATCGGCAAGAGCCTGCAGACGCACTTATTGGTTCACGAGGGCAATAAGCCCTTCAAGTGCCACTTGTGTGATAAAGCATTTTTCCTCAGTAAGAGTCTCGAAATCCACTTATTGGTTCATAAAGGAGAAAATCCCTTTAAATGCAACGTGTGCAAGCGAGCTTTCACAAACAGCAGCAATCTCAGGCGACACATGTTGGTGCATAAGGGCGAAAAACCCTTCCAATGCAATGTGTGTGCTAAGAGTTTTTTAACAAAGCGCAATCTCAAAGAACACTTGTACATTCATAACGACGAAGGGACCTTTAAGTGCGATGTGTGCAATAAAACCTTCAAACAAAAGCGCAGCCTCAACGAGCACAAGTTGATCCACAATGACGAAAAGGCCTTCAAATGCGACTTGTGCGATCAAGCGTTCAACCACAGCAACAGTCTCAAAATACACTTGTTGGTCCACAAAGGGGAGAAACCGTTTAAGTGTCAAGTGTGCAATAAAGGGTTCACTCAAAACGTGCTCAAAAGGCACATGTTGGTCCACAGTGGAGAGAGGCCCTTTAAATGCGACGTTTGCGGCAAAGGCTTCACCGGGAAGGGCAATCTCGACAAACACATGTTGATCCACACGGGCGAAAAGCCCCACAAGTGCACCGTATGCGACAAAGCGTTTCAACAGAAGCGCAGCCTGACCGTGCATTTGCTGGTCCACAAGGGCGAGAAACCCTGCATATGCCACGTGTGCGGAAAAGCGTTCACGCACGCCATCCACCTCAAAGCGCACATGGTGGTTCACGACGGCGAGAAAACCTTTAAATGCGACCAGTGTGATAAAGGTTTTACCCGAAAGCACATCTTGAAGGCGCACATGTTGGGACACGAAGGCGAGAAAGCCTTCAAGTGCAACCTTTGTGATAAAGCGTTCCTTTTTGTGAACCGCCTCAATAGGCACATGTTAGTGCACAACGACGAGCGACCCTTCAAGTGCCACTTGTGCGAGAAAGCGTTCAGAGAAGCTCGCACCCTTAAAACGCACATGTTGGTTCATACCggcgaaaaaccgcacgaaTGCAATGTGTGTAATAACACCTTCACGGCAAAAAGCAGTCTATATAAACACATGTTGACACACAAGGAggagaaaccttttaaatgtcaattgtGTGATAAAGGTTACACACAAAAGAAGAGCCTTAAAATTCACATGGTGGTTCATAACGGCGAAGAATCGTTTAAATGCAAAGAGGAGCCCATGCTATAA
Protein Sequence
MDNCDSVQFKPEGEAVIIKDEFDTAENFVAIFEEDLAIKAQVKTEPSQYNDEFNNLSDDTVTPTISNYEFQANLKQEDWREDYIGQHPFTTTSNQDEIKIEKCELNFDLISPDEFLKVAKLECGECGSCFADNDQLEEHLRIHTLDRPKRNRKTKVKTDMVAYEGRPFKCDVCNKAFTQSGNLKTHMFVHKAEKNFKCNECNKAFAQKANLKYHMLVHKGETPFKCTECNKGFTAKCNLNLHMFTHTGEKPFKCQLCNKSFVHNGALKSHMSVHERKMAFKCHLCDKRFTFNSSLKFHILVHKGEKPFKCNECNKAFIHKRNLNYHLLVHKGETPFKCHECGKGFITKSNLKVHVLSHTGDKPFKCQLCDKQFIHKIAFSNHLLVHEGKKPFACHLCDKTFTIGKSLQTHLLVHEGNKPFKCHLCDKAFFLSKSLEIHLLVHKGENPFKCNVCKRAFTNSSNLRRHMLVHKGEKPFQCNVCAKSFLTKRNLKEHLYIHNDEGTFKCDVCNKTFKQKRSLNEHKLIHNDEKAFKCDLCDQAFNHSNSLKIHLLVHKGEKPFKCQVCNKGFTQNVLKRHMLVHSGERPFKCDVCGKGFTGKGNLDKHMLIHTGEKPHKCTVCDKAFQQKRSLTVHLLVHKGEKPCICHVCGKAFTHAIHLKAHMVVHDGEKTFKCDQCDKGFTRKHILKAHMLGHEGEKAFKCNLCDKAFLFVNRLNRHMLVHNDERPFKCHLCEKAFREARTLKTHMLVHTGEKPHECNVCNNTFTAKSSLYKHMLTHKEEKPFKCQLCDKGYTQKKSLKIHMVVHNGEESFKCKEEPML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00422846;
90% Identity
iTF_00422846;
80% Identity
iTF_00422846;