Basic Information

Insect: Danaus plexippus
Gene Symbol: RREB1
Assembly: GCA_018135715.1
Location: CM030924.1:3134215-3138480[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.1 2.2e+02 2.9 0.9 1 23 82 105 82 105 0.93

2 12 2.6 1.8e+02 3.2 0.2 2 12 137 147 136 157 0.80

3 12 0.019 1.3 9.9 0.1 1 23 283 305 283 305 0.97

4 12 0.001 0.071 13.9 0.4 1 23 314 336 314 336 0.99

5 12 0.00063 0.044 14.5 2.0 1 23 342 365 342 365 0.97

6 12 0.0026 0.18 12.6 1.6 1 23 715 738 715 738 0.96

7 12 0.00021 0.015 16.0 1.3 2 23 930 951 929 951 0.97

8 12 0.022 1.5 9.7 5.3 1 23 957 980 957 980 0.97

9 12 0.19 13 6.8 1.4 1 23 1011 1035 1011 1035 0.90

10 12 0.023 1.6 9.6 0.2 1 23 1058 1081 1058 1081 0.95

11 12 0.0016 0.11 13.3 0.2 2 23 1121 1142 1120 1142 0.96

12 12 0.024 1.7 9.6 5.3 1 23 1148 1170 1148 1170 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.1	2.2e+02	2.9	0.9	1	23	82	105	82	105	0.93
2	12	2.6	1.8e+02	3.2	0.2	2	12	137	147	136	157	0.80
3	12	0.019	1.3	9.9	0.1	1	23	283	305	283	305	0.97
4	12	0.001	0.071	13.9	0.4	1	23	314	336	314	336	0.99
5	12	0.00063	0.044	14.5	2.0	1	23	342	365	342	365	0.97
6	12	0.0026	0.18	12.6	1.6	1	23	715	738	715	738	0.96
7	12	0.00021	0.015	16.0	1.3	2	23	930	951	929	951	0.97
8	12	0.022	1.5	9.7	5.3	1	23	957	980	957	980	0.97
9	12	0.19	13	6.8	1.4	1	23	1011	1035	1011	1035	0.90
10	12	0.023	1.6	9.6	0.2	1	23	1058	1081	1058	1081	0.95
11	12	0.0016	0.11	13.3	0.2	2	23	1121	1142	1120	1142	0.96
12	12	0.024	1.7	9.6	5.3	1	23	1148	1170	1148	1170	0.97

Sequence Information

Coding Sequence: ATGTGCGTCGGTTTGACTCGTTCCTTTGTTTTTACAGAAATCAAAACAGAAGTCATCGTCGAGGCCAAAGTTGAAAGTGAGAAAGAAATGAAGATAGAACAGGAATCGCGCGCCACGCGCACCACCAGCATAGACAGCGACAACAGGAGCGATAGAAGCGAAGAAGATGACTGCAGGAGAGCGCGCAAGAGGATGGCCTCATCGTCTCCGTCCCCCATACCCTTGGACAAAAGGACAGCTCGCTTCGAGTGCCGGAAATGCCTGCAGCGTTTCGACTCCATAAACGCTTTCGATCTTCACCGATTTACAGCTCACGGAGACGACAACAGATCCGGATTCGACGATTATATAGATTATTCCAGCAAAAAGTTCCAAGATATCATACACCCTCACATAGCAGAGGGGCTGCGGTGTGATCACTGCTCCCGCGAGTTCCCCACGGGGCAAATCTTGGATATTCACAGGAAGACATGCGGCGGGTCGACAAGAATATCCAGCCCCGACCGGGATCGCAGAGAGTTCTTCGCTAAGCTGGATTTAAGGAACAGGTCCTTCGGTATACCCGGGACGTTAACCCCACCTATGGATCGCTTCACACCAAAGTTTGACGAAACCCACCTCGCTAATGGAATTAGACCTATCGATGCCGCAAGAGACTTGGCTGATATTCAATCAATACTGAATGTAACATCTGCTGGAAGTCTCCTAGAAAGACTTACGGGTAGTCGTGTAGCTTTAGAAAGTTCGGTCCTAACACCTCCGGACACAGTCGTTAAGGAACGGGAACAAGAGGAGACTCAGGATAATTTCGCTGCTGAGTTCAGGAGAATGAAGCTCCGTGGAGAATTCCCTTGTCGATTGTGTCCCGCAAAATTCCCAAATCTTAGAGCTTTAAAGGGACACAATCGGGTTCATCTGAGTGGAACCGGCCCAGGGCCATATCAATGTAATATGTGCCCGCATGCATCCCTGGACAAAGCAGCTCTTGTTAGGCATATGCGTACTCATAACGGAGACAGACCATACGAGTGCGCTGTGTGCAACTACGCCTTCACAACAAAGGCTAACTGCGAACGACATCTAAGAAACCGTCATGCAAAGATTACGAGAGAAGACGTGAAGCGGTCTATCATTTATCATCCATCTGAAGACCCCAACAATGATGAGGTCAATTCAAAGCTCGCTCGTGAGGAGGTCAAAAGGTCCTTGGCCTTCCACACGCCGGAGGTTGATAGACGCAATGAATCATCTGGACGTAACACTCCCCTAACTCACTTTAATCCCAGTTTCATCACCGATCGACACCCTGTTACTTCTTTGACTAAGCCTTTACCTGAAACACCTACTTTAACCCCAAGAGAACCTGAGCAGCCCATGCCAAGAATAAAAGTCAAAGGGATCGGCCAATTGACCCAAATTCCTGAATTTAGGACTCCAGAGTTAACATTTAAACCAAACGACATACAGTCCGAAGCGTACAGCGAAGAAGCACCAGTAGACCTCAGTACGAGCGACAACAACAACTGCGATGTTTTAGATCTCAGTAAGAAAAAACGCGATGTAGACGATGACGAAACAAAGACAACACCTCGCTCTGCCTTCGATAATTCGTCTGCATCCGCTGCTGCATCCGCCGCTGCATCTGCTTTCGAAAAGACAAGGCTTCTTCTAGCTCAACAAAGACTTTTCGAAACCTCTCTACCGAAAATCGATCCAGCTTATTACGCCACCCAACTTTCTCAGCTCTACGCCAGTGCAGTACCAGGCTTGCCTGGTTTGCCGATACCGTCGTCATTCCCCATAAACCCATACTTTCTCCAAACTTCTTTTTTTCCCCACCCAACAGATTCGCAAGAAATAACTGAAATCAAGCAGCGTATTCACAAAGAAATATTTAGAGGTCTAAGTATGTCTGGTGGGAGATTAGTGGACGATACTGAAGCTCAGCTCAAACAGGAGCCAGAGGAAGAGGAAGTTAAACCTATCCCAGTAGCCTCGACTCCGACTCCCCCTCCCCATGCTGAATCTCCCCGTCCGTTGAGTAACCCATTAGTAACACAAAACGATTCCGTTAAGATGGTAATAAAAAATGGCGTTCTTATGCCGAAACAAAAGCAAAGGCGATACCGGACTGAAAGACCTTTCTCCTGCTCTCAGTGTTCCGCTCGGTTCACACTGCGCTCAAATATGGAACGGCACGTCAAACAACAGCATCCTCAACACTGGAGCGTCAGACGTCCATCGCCAAGAGCACCCCCGCCGTATCCTACAACAGACACTCTAGCCGATCGTGTAAAATATGCCTTACTCGCTCGTCACTTGGAGAGACCCTTGCAGGCAGATCGCTCTCCTGTTCGAAGAGATTCGGATGAAGTAGCAGACAACGAAGAGGACGAGGACGACACCTTGGTCATCGACGAGGAACCTGAAGACCGCAAGCCCGAGGAGCACACGGCCGCTCGGAGAGCTGCAGCTGAAATTCTCATGGCCTCGTGTCAGCAAGAAATGCATAAGGATTTTGATCTCAAAATAGCTGGAAATCTTATTAACAAACCGGTCGCCCCAATCACAACTGACAAGGTCGAAGCTAACGCAGATCTTCTACCAACTCAAGATGCCATACCAGTTGTTCCAACTCGCAGTGACGAAGAAGAAGATGAGGAAGGTCTCGTGGCTTCCACCAGTGAGGGAAACAATTCGGGAAGCGATGAAAATAAATCTGAATCCGACACTGGAACGCAGCCTCCAAAGAAGAAATCCGCTTACAGTCTAGCACCCAACCGCGTCTCCTGCCCGTACTGCCACCGCAAGTTCCCGTGGTCCTCATCCCTCCGACGCCATGTTCTGACACACACGGGACAGAAACCTTTCAAATGTCCTCATTGCCCCCTTCTATTTACAACGAAATCCAACTGCGACCGCCACTTACTCAGGAAGCATGGGGGCTCAGCCAAAGCTATTCTCGCCGAACCCATTCCGGACACCATAACACCTCAAAACAACGAAAGCAGATCTGTACCTGAGAGGCCTTTTAAATGTGCGTCCTGTCCCACCAGCACGTTCTCCTCTATGGAGACATTGAAGAAACACATGTCTTCTCGGCACGGGACGGCCGAGTCACAGCCGAATTCACCAAACCCTGAAGTGGAAGATGTTGATGGAAGCCTAGTTTTCAAGTGTCACCTCTGCGAAGCGTCGTTCGGGGACCGGTCCGGAGCCCTAACACACTTGGCATCAGTCCACGCCGCGGAGTACGAACAGCTTGTGAGCAAGGGAGCTCTAGACGCCGTCAGCGATCGCAGTGAAAGCGCCGACGACGATGAGAAGGGGAAGTTCCCAGATCACGCCAACAGAAAGGTCGTGTGTGCGTTCTGTGTTCGTCGTTTTTGGTCGGCGGAGGACCTGCGTCGTCACATGCGGACTCATTCTGGAGAGAGACCCTTCGCCTGCGACCTGTGCCGGAGACGGTTCACGCTGAAACACAGCATGCTGAGACACAGGAAGAAACACAGGGAGGATAGTGACGATGAAGACTCGCCCAGGGACAATGGATACCGCTACCACGATGAAGAGGGTTCTGGTAACGAGGTCCCCAGCAACGTCAACAACAATAACTCCCCGCCGGCTGCGGACAAGAAACTCAAAATAGAAATGACATCGCGCAAATATTCCTCGGAGAACGAGAACGACGCGGAAAATGGCGGAGATCTCATCGGGAAACTACTCGGGATACCGGACAAGACCATCATCAACAAGCTGCTCTCATCAGCGGATGAAGCTGCCAAATTCCTTGGCGTGAACAAATGA
Protein Sequence: MCVGLTRSFVFTEIKTEVIVEAKVESEKEMKIEQESRATRTTSIDSDNRSDRSEEDDCRRARKRMASSSPSPIPLDKRTARFECRKCLQRFDSINAFDLHRFTAHGDDNRSGFDDYIDYSSKKFQDIIHPHIAEGLRCDHCSREFPTGQILDIHRKTCGGSTRISSPDRDRREFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDETHLANGIRPIDAARDLADIQSILNVTSAGSLLERLTGSRVALESSVLTPPDTVVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKITREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEVDRRNESSGRNTPLTHFNPSFITDRHPVTSLTKPLPETPTLTPREPEQPMPRIKVKGIGQLTQIPEFRTPELTFKPNDIQSEAYSEEAPVDLSTSDNNNCDVLDLSKKKRDVDDDETKTTPRSAFDNSSASAAASAAASAFEKTRLLLAQQRLFETSLPKIDPAYYATQLSQLYASAVPGLPGLPIPSSFPINPYFLQTSFFPHPTDSQEITEIKQRIHKEIFRGLSMSGGRLVDDTEAQLKQEPEEEEVKPIPVASTPTPPPHAESPRPLSNPLVTQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPTTDTLADRVKYALLARHLERPLQADRSPVRRDSDEVADNEEDEDDTLVIDEEPEDRKPEEHTAARRAAAEILMASCQQEMHKDFDLKIAGNLINKPVAPITTDKVEANADLLPTQDAIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIPDTITPQNNESRSVPERPFKCASCPTSTFSSMETLKKHMSSRHGTAESQPNSPNPEVEDVDGSLVFKCHLCEASFGDRSGALTHLASVHAAEYEQLVSKGALDAVSDRSESADDDEKGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREDSDDEDSPRDNGYRYHDEEGSGNEVPSNVNNNNSPPAADKKLKIEMTSRKYSSENENDAENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986645;
90% Identity: iTF_00843043;
80% Identity: -