Dmel026064.1
Basic Information
- Insect
- Danaus melanippus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_010014825.1
- Location
- JAAAKD010000756.1:11489874-11497671[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-76 2.9e-71 242.0 21.1 1 263 116 371 116 391 0.89 2 3 0.015 9e+02 0.6 0.1 256 298 402 445 385 447 0.71 3 3 1 6e+04 -7.4 16.6 1 49 443 493 443 517 0.67
Sequence Information
- Coding Sequence
- ATGATATCCGCTATGGCTGAGTCAGGACTGGCGACCCCCGAGAACTCTGATGATGAGAGCGGTGATGCCTTCACAGATGGTGATTTCGGTGATTCGGATGACGAGGTGATCGCCGATAGTAAGACAAGTGACGGTTCAAATTCTCAGCACGTCAATGAGACTGTGAACACTGGTGTTGTGGAAAAGAATTGTAGTGACATTATAGATATAGGTGTTGAGGACAATATGAAGGATATCAGTGAAAATAGTGGTGTTAtacatgatgatgatgatgatgatgatctgATGAAGGATTTGAGCAGCAACGGATCCATCGTCGGCATACTCGGCGATCAACAGAGTCATGCCGAGCAACGCCTGGCGGCTCGACGAGCGGCTCGCGCGGAGGCTCGGGAGATACGGATGAGAGAACTGGAGAGACAACAGAGAGAACAGGAGGACCACGCCGATAAGGCGTACGACATGTATAACGAGACGGTCGGCCGCCGCGCTGGCAGCCGGCTAGCAGCGCTGAGTCCCAGCGTGCACTCGCCCAGACGAAGCTCCGAAGACTCCGAGGACGTGCTCAGCATCAAGGACCTTAGACACGAGATGAAAGAGGTCGAGGAGAAGTTTCGTAAGGCGATGATCCTGAACGCCCAGCTCGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATCGAGGAGCTGCACGAGGAGTACGCACAGCTACAGCGCGAGCACCGCGAGAAGTGTTCCCTCCACGAGCGGCTGAAGAGAGAGCACGCCACCCTGGAGCGGGAGGTGGCGGAGGCGCGGGACGCCGTGCGGGCGAGGGATGGCGCGGCAGCGGCGGCGGGCCGGGTGTTCGTGGACGCCAGCGCCGCGCCCGACGCGCCGTCCGGCGGGGCGTGCGGCGCGGTGCCCTCCCTGGCACTCGTCACGCTCGAGAACCAACAGCTGCTGGACGACGCCGGAGAGGGCACGCTCGACGTGCGACTGTCTCGGCTGGCCGAGTCCAGGTCGAACCTGGAGGGCGAAGTGCGGCGTCTCAAGCTGCAGCTGTGTGACGAGCGAGCCGCCAGGCAGAATGGAGTCGCCCAGAACCACGACAGAGACCTCGACAACGAACGtcagtacacacacacacacacacacatatatataaatatatatgcgatCTCTACCATTGTTGAACAAAGACGTCAAAATCGACTCCTTGCGAACGATGAACAgaagtcaataaataataataaagttattaacattCCAGTGGAATCTCTCCGCAAGGCGTTGTCCGAAGCGAAGGGTCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTACAGGCGGCCGGCGTGGCGCGGCTCGAGGCGCAGCTGGCGAGGATGAGGGCGAGACAAGACGACCAGGACGAGCGGGAGGAGGCCCTCAAACAGGACCGGCGGAGGCTGCAGAGAGAGGCGAGAGAGGCGCTGAACCGGGTCGAGGAGCTGGAGACGGAGAACAGTCACCTCACCAAGAGACTCGACAAACTCAAGAACGCTAAATCAGCCTTACTCAAGGACCTGTGA
- Protein Sequence
- MISAMAESGLATPENSDDESGDAFTDGDFGDSDDEVIADSKTSDGSNSQHVNETVNTGVVEKNCSDIIDIGVEDNMKDISENSGVIHDDDDDDDLMKDLSSNGSIVGILGDQQSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYNETVGRRAGSRLAALSPSVHSPRRSSEDSEDVLSIKDLRHEMKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSLHERLKREHATLEREVAEARDAVRARDGAAAAAGRVFVDASAAPDAPSGGACGAVPSLALVTLENQQLLDDAGEGTLDVRLSRLAESRSNLEGEVRRLKLQLCDERAARQNGVAQNHDRDLDNERQYTHTHTHIYINIYAISTIVEQRRQNRLLANDEQKSINNNKVINIPVESLRKALSEAKGRAARAEAEAALQAAGVARLEAQLARMRARQDDQDEREEALKQDRRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00421380;
- 90% Identity
- -
- 80% Identity
- -