Dere005213.1
Basic Information
- Insect
- Danaus eresimus
- Gene Symbol
- -
- Assembly
- GCA_018231745.1
- Location
- DVQP01002665.1:2396-4457[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 4e-05 1.2 10.0 0.0 26 47 141 162 133 166 0.88 2 6 0.0075 2.2e+02 2.7 0.1 22 52 192 222 183 223 0.80 3 6 0.00034 10 7.0 0.1 16 48 246 277 235 284 0.80 4 6 0.0038 1.1e+02 3.7 0.1 18 52 276 310 275 312 0.90 5 6 1.6e-06 0.048 14.5 1.1 8 48 322 361 314 368 0.81 6 6 0.026 7.7e+02 1.0 0.1 23 48 393 418 383 421 0.85
Sequence Information
- Coding Sequence
- ATGACTTCAGAGTTTATCCAAATAAAGAAAGAGCCAGTGTCTGGAGAACCACTGTCGTCGGATGAAAacgtaaataatgttaataataaacaaatcacAGAAAATGTCGGTGTCTTTGAACAGAAAATAATGAGTGTAGAATTTGTGAACATTAAAGTGGAGCCGCGGGACGATGCTAAGCAGGACCCCAACCTGCTTGTTGAGACGTCAACATTTCACAGCACGACTGTTAAAGAGGAGCCCGGTTACCACAACATAGATGTTGAAGTGTCCATTAAGGAAGAGCCCTTGGATAATGATAGTGTGGAATCGACCAACTTCAGTGTACCAGAGACTGTGAGAGGTCCTccgtgtaatatttatatcagtaaCGTGTCGGAGGAGATCTTGAGTCTGAACTCAACTGTGGACGGTAAGTACATGTGTCCCATATGTTACAAGAGATTCGCCAACAAAGGTAATGTTCAGAGACATGTGGCCCTACACTCGAGGGAGAAATGGGAGTGCGAAGTGTGCTTCAGACAGTTCTTCAAAAAAGTGCTGTACGAAAAGCACCTCCTGACGCACTCCACGGAGAAGAGATTCAAGTGTGAGGAGTGTCAGAAGACGTTCAGGACGTCCTCCAACCTGGAGCAGCACAAGAGAATACATCTGACGGTGAAACCCTTCGAGTGTGACACCTGCAAGCGACAGTTCTCCGTGAGAGCGAACTTACTGAAGCATCAGGGCGCGGGCAGGTGTAAGAAACCCAGCGACAAGCCTATAGAGTGCGGGGTCTGTCAGAAGGTTTTCCAGAAGGAGTTCCTGTTAAAGAGTCACCTCAGGAGACACACGACGGAGCGGCCGTTCGTCTGCGACAAGTGTAAGATGAGTTTCAAGTACAAGTCGACTCTGATACGTCACGTGCAGCTCCACAACGGCATCAAGCCATACTCCTGCAAGATATGCAGGAAGAGGTTCACCCATGCGGGGCTCATCAAACCCCACATGAGGAAACACACGGGCGAGAAACCGTACACGTGTCCGGTCTGCGACAAGAGCTTCGCGCACAAACACAACATGCAGCGACACACGGTCCGTCACTCCAAGATAAAGAACACGGTGTGCGCCGTCTGCAGCAAGACCTTCCCCAAGGAGAGTCGCCTCATCTACCACATGAGGACGCACACCAACGCCAAGCCTTTCGCGTGCGGGGTCTGCGAGAAGAAGTTCTCCCACCGGCAGAACATCATCAGGCACTACGGACGGAAGCATCCCGGAGACACGTACGAGTGTCGCGACACGGACGCCAGTGTGGCCAAGGACGTGTGGGAGAACGTCGTCAGGAACATGAACCCGGCGCACGGCGACGTCAGGATAACGCCGGACTGA
- Protein Sequence
- MTSEFIQIKKEPVSGEPLSSDENVNNVNNKQITENVGVFEQKIMSVEFVNIKVEPRDDAKQDPNLLVETSTFHSTTVKEEPGYHNIDVEVSIKEEPLDNDSVESTNFSVPETVRGPPCNIYISNVSEEILSLNSTVDGKYMCPICYKRFANKGNVQRHVALHSREKWECEVCFRQFFKKVLYEKHLLTHSTEKRFKCEECQKTFRTSSNLEQHKRIHLTVKPFECDTCKRQFSVRANLLKHQGAGRCKKPSDKPIECGVCQKVFQKEFLLKSHLRRHTTERPFVCDKCKMSFKYKSTLIRHVQLHNGIKPYSCKICRKRFTHAGLIKPHMRKHTGEKPYTCPVCDKSFAHKHNMQRHTVRHSKIKNTVCAVCSKTFPKESRLIYHMRTHTNAKPFACGVCEKKFSHRQNIIRHYGRKHPGDTYECRDTDASVAKDVWENVVRNMNPAHGDVRITPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00419169;
- 90% Identity
- iTF_00419915; iTF_00419169; iTF_00421542; iTF_00420720; iTF_00419455;
- 80% Identity
- iTF_00419915;