Dere005213.1
Basic Information
- Insect
- Danaus eresimus
- Gene Symbol
- -
- Assembly
- GCA_018231745.1
- Location
- DVQP01002665.1:2396-4457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.1e-06 0.00067 20.7 0.2 1 23 140 162 140 162 0.96 2 10 0.0031 0.26 12.5 0.8 2 23 168 189 167 189 0.97 3 10 3.8e-08 3.1e-06 28.0 2.4 1 23 195 217 195 217 0.99 4 10 0.0003 0.025 15.7 0.3 1 20 223 242 223 243 0.97 5 10 0.00015 0.013 16.6 0.6 2 23 256 277 255 277 0.97 6 10 6.3e-06 0.00052 21.0 1.8 1 23 283 305 283 305 0.97 7 10 0.00033 0.027 15.6 2.7 1 23 311 333 311 333 0.98 8 10 2.1e-06 0.00018 22.5 4.3 1 23 339 361 339 361 0.97 9 10 4.4e-05 0.0036 18.4 0.4 2 23 368 389 367 389 0.97 10 10 0.00096 0.079 14.1 2.0 1 23 395 418 395 418 0.93
Sequence Information
- Coding Sequence
- ATGACTTCAGAGTTTATCCAAATAAAGAAAGAGCCAGTGTCTGGAGAACCACTGTCGTCGGATGAAAacgtaaataatgttaataataaacaaatcacAGAAAATGTCGGTGTCTTTGAACAGAAAATAATGAGTGTAGAATTTGTGAACATTAAAGTGGAGCCGCGGGACGATGCTAAGCAGGACCCCAACCTGCTTGTTGAGACGTCAACATTTCACAGCACGACTGTTAAAGAGGAGCCCGGTTACCACAACATAGATGTTGAAGTGTCCATTAAGGAAGAGCCCTTGGATAATGATAGTGTGGAATCGACCAACTTCAGTGTACCAGAGACTGTGAGAGGTCCTccgtgtaatatttatatcagtaaCGTGTCGGAGGAGATCTTGAGTCTGAACTCAACTGTGGACGGTAAGTACATGTGTCCCATATGTTACAAGAGATTCGCCAACAAAGGTAATGTTCAGAGACATGTGGCCCTACACTCGAGGGAGAAATGGGAGTGCGAAGTGTGCTTCAGACAGTTCTTCAAAAAAGTGCTGTACGAAAAGCACCTCCTGACGCACTCCACGGAGAAGAGATTCAAGTGTGAGGAGTGTCAGAAGACGTTCAGGACGTCCTCCAACCTGGAGCAGCACAAGAGAATACATCTGACGGTGAAACCCTTCGAGTGTGACACCTGCAAGCGACAGTTCTCCGTGAGAGCGAACTTACTGAAGCATCAGGGCGCGGGCAGGTGTAAGAAACCCAGCGACAAGCCTATAGAGTGCGGGGTCTGTCAGAAGGTTTTCCAGAAGGAGTTCCTGTTAAAGAGTCACCTCAGGAGACACACGACGGAGCGGCCGTTCGTCTGCGACAAGTGTAAGATGAGTTTCAAGTACAAGTCGACTCTGATACGTCACGTGCAGCTCCACAACGGCATCAAGCCATACTCCTGCAAGATATGCAGGAAGAGGTTCACCCATGCGGGGCTCATCAAACCCCACATGAGGAAACACACGGGCGAGAAACCGTACACGTGTCCGGTCTGCGACAAGAGCTTCGCGCACAAACACAACATGCAGCGACACACGGTCCGTCACTCCAAGATAAAGAACACGGTGTGCGCCGTCTGCAGCAAGACCTTCCCCAAGGAGAGTCGCCTCATCTACCACATGAGGACGCACACCAACGCCAAGCCTTTCGCGTGCGGGGTCTGCGAGAAGAAGTTCTCCCACCGGCAGAACATCATCAGGCACTACGGACGGAAGCATCCCGGAGACACGTACGAGTGTCGCGACACGGACGCCAGTGTGGCCAAGGACGTGTGGGAGAACGTCGTCAGGAACATGAACCCGGCGCACGGCGACGTCAGGATAACGCCGGACTGA
- Protein Sequence
- MTSEFIQIKKEPVSGEPLSSDENVNNVNNKQITENVGVFEQKIMSVEFVNIKVEPRDDAKQDPNLLVETSTFHSTTVKEEPGYHNIDVEVSIKEEPLDNDSVESTNFSVPETVRGPPCNIYISNVSEEILSLNSTVDGKYMCPICYKRFANKGNVQRHVALHSREKWECEVCFRQFFKKVLYEKHLLTHSTEKRFKCEECQKTFRTSSNLEQHKRIHLTVKPFECDTCKRQFSVRANLLKHQGAGRCKKPSDKPIECGVCQKVFQKEFLLKSHLRRHTTERPFVCDKCKMSFKYKSTLIRHVQLHNGIKPYSCKICRKRFTHAGLIKPHMRKHTGEKPYTCPVCDKSFAHKHNMQRHTVRHSKIKNTVCAVCSKTFPKESRLIYHMRTHTNAKPFACGVCEKKFSHRQNIIRHYGRKHPGDTYECRDTDASVAKDVWENVVRNMNPAHGDVRITPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00419169;
- 90% Identity
- iTF_00420210;
- 80% Identity
- iTF_00420210;