Ccot006697.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- grn
- Assembly
- GCA_001594065.1
- Location
- NW:2183102-2259569[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-19 4.1e-16 57.7 4.7 1 35 476 509 476 510 0.98 2 2 7.5e-18 1.5e-14 52.7 5.6 1 35 533 566 533 567 0.97
Sequence Information
- Coding Sequence
- ATGGACATGAGCAGCGAGTCGAGCGCCAGGACGTGGTACGAGACGCCTAGGTTGGAGCCGCCTTCGGGGGGTGCCGGGGTGGCCGGAGTGGTCGGCAACGATTACAGGGGTTACTACCCTCACACCGGACCGACGGCGCATCACCCCGCAGCTGCGGCCCACTACGCTCACACGAGAATGTCGAGCAGCGGCGTGTCGAGCGGTCCAGTGAGCCAAGTCTGCCGGCCGCATTTCCACAGCTCGGTTCTCCATCCGTGGCTCTCCGGCAGCAGCGCGGATACCTCGAAGACACCCTGGGGATTCCCCGCGACGACGACCACGGGCGGTGCTGTGAACGACGAGAAGCCGCAGAGTCCCTTAGGATCCTCGCTACCACCCACCACTGGAAGTTTGTCGAGTCACGGTGGCGGTGGTCATCATCTCTTCTCCTTTCCGCCGACACCGCCCAAGGATGCTACGCCTGATAGCATAACCGCCAGCACGACCTCCAGCACGAACAACAACAACTCTACGAgcgctaataataataacagtggTAATCCTCTCTCCGGGTTGGGCGGTGGTACTACCAGCGATTACCAAGCGGCGGTCGCTCACGCGGCGGTAATGGGCGCGTTTATGCACCATCAAGACGCGCTAGGCGCATCCGGTGCCAGCTCGTGCGACATCAAGCCGACGGTGATGCTTGGCCATCATCACGGAGCGCCCTCGCCGCCACATCAGCAACACAACGGTTCCAACAACGGCAGCAATGGTCCTGCCGGCACGAACGGCTCATCCGCCGGCCAGGTGAAGCAACGAGAAGGTAATAATCAATCTGGCAATGTGACGGGCAGCCAACAGGCGAGTGCCACgcaacagcagcaacaacagcaacagGACGCGTATCAGAGCAACAACGGTGTGCCggccggcggcggcggtggtggtggcggtggtggtggcggcggcggcggcggtggcggcagTGGCAGTGGCGGCGGCGCGGCCTCGCCCTGTAGAGACAATTACGCGGCCGCGGCCGCCGTCGCGGCAGCGACCAACAGCCACCATGCCACTTCCGGTTCGCAGTATGACCCAGCTGCGAGCGCGTACAATATGTACCAGCACCTGCAGTATCCCACCACCACCCACCAtcaccatcatcatcatcacggCGCCACCTCGTCGTCTACCGCCGCGTCCCACAATCCGCACAACGGCAGTGCAGCCGCGATCGCCGGTATTTTCGGTCACCATGCCGGCGGTGCCGGCACCGGTAATGCAACCGGCGGCCTAGCCGGCGGCCTACCCGGCGGCGCCGACTCGAAGCTGCTAGTCGGTCACGCGGCCGCGCACGGAAACACGCCGGGCTCGCCCTCCgcgcagcaacagcagcagcaaaaGCCGAGGAACAAGTCGAGGACGTCCGCCGAGGGTCGTGAGTGCGTGAATTGCGGAGCCACATCGACACCCCTTTGGAGACGAGACGGCACTGGTCACTACCTCTGCAACGCTTGCGGGCTTTATTACAAGATGAACGGTCAGAATCGACCCCTCATCAAGCCGAAACGACGACTGTCGCTGCAGAGTGCGGCGAGACGGGCGGGCACCAGCTGCGCCAACTGCAAGACGGCGACCACGACCCTCTGGCGGAGGAATCAGGCCGGTGAGCCAGTCTGCAACGCTTGTGGGCTCTACTACAAGTTGCACAACGTGAACCGGCCGCTGACGATGAAGAAGGAAGGTATCCAAACGAGAAACAGGAAGCTCTCGTCGAAAAGCAAGAAGAAAAAGGCCGGCGGTTGTCTAGGTCTCGGTGGTGTCATGGGCGACATGATCAAGGCCAGTGGACACCTTGATCTCGACAACAAGCCCTTCCACTCAGGATTCGGATCGCCAATGGGTACGTCGCAGCATCATCACACGATGCATCCGGCGATGCAGCATTACATGTATCACACGGGTGTCGGCGTGGCCGGAGGTCTTCATCAGGGATTTGCGCCACCGGCGCCGCCCCCCATCCACCCGCACTCACATTCGCATTCCCATTCTCATCACATGACGAGTCTTCAGGGTCTGCAGCTGGCGGCCACGACGAACGCAATGACCGGCTGGCGATCGGAGTACACATGA
- Protein Sequence
- MDMSSESSARTWYETPRLEPPSGGAGVAGVVGNDYRGYYPHTGPTAHHPAAAAHYAHTRMSSSGVSSGPVSQVCRPHFHSSVLHPWLSGSSADTSKTPWGFPATTTTGGAVNDEKPQSPLGSSLPPTTGSLSSHGGGGHHLFSFPPTPPKDATPDSITASTTSSTNNNNSTSANNNNSGNPLSGLGGGTTSDYQAAVAHAAVMGAFMHHQDALGASGASSCDIKPTVMLGHHHGAPSPPHQQHNGSNNGSNGPAGTNGSSAGQVKQREGNNQSGNVTGSQQASATQQQQQQQQDAYQSNNGVPAGGGGGGGGGGGGGGGGGGSGSGGGAASPCRDNYAAAAAVAAATNSHHATSGSQYDPAASAYNMYQHLQYPTTTHHHHHHHHGATSSSTAASHNPHNGSAAAIAGIFGHHAGGAGTGNATGGLAGGLPGGADSKLLVGHAAAHGNTPGSPSAQQQQQQKPRNKSRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAARRAGTSCANCKTATTTLWRRNQAGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKAGGCLGLGGVMGDMIKASGHLDLDNKPFHSGFGSPMGTSQHHHTMHPAMQHYMYHTGVGVAGGLHQGFAPPAPPPIHPHSHSHSHSHHMTSLQGLQLAATTNAMTGWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262137;
- 90% Identity
- iTF_01355787; iTF_01099569; iTF_00181654; iTF_00899195;
- 80% Identity
- -