Ccot002445.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:53956-64532[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.23 5.3e+02 0.3 0.2 21 44 65 88 39 94 0.86 2 9 2.7 6.2e+03 -3.2 0.0 21 43 135 157 132 162 0.75 3 9 0.00093 2.2 7.9 0.0 21 48 205 232 200 236 0.92 4 9 3 7.1e+03 -3.3 0.0 21 43 346 368 342 373 0.74 5 9 0.052 1.2e+02 2.3 0.0 21 45 416 440 406 445 0.86 6 9 0.0014 3.3 7.3 0.0 21 48 486 513 481 517 0.92 7 9 0.17 4e+02 0.7 0.0 21 45 556 580 551 585 0.87 8 9 0.0014 3.3 7.3 0.0 21 48 626 653 621 657 0.92 9 9 0.097 2.3e+02 1.4 0.0 20 48 695 723 689 725 0.88
Sequence Information
- Coding Sequence
- ATGAATCAAAATGAAGAAACGAATAACGACACAAAAGATGGACAACAGCGCGATAAGCGAACTGACGCCCCGACAACTTTAATTGGAAATAATAGAGACGTACAAATTGAAATTAGACCACACGTATGCGGAACTTGTGATAAAGGGTTTAAGAAGAAATGTGATTTGCGTATTCATGAGAGAATTCATAATGACGAAAAACCTTATCAATGCGAACTTTGTCGATATAAATCTAGGATCAAAAGTAACCTAACATCGCACATGGTGTCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGCATTTGTATGTTAGAGGAATATCATACAAATGCGaaacgtgtaataaagagtttaagaataaaaagaatttgcaTATTCATGAGAGAATTCATAATGACGAAAAACCTTATGAATGCGATTTTTGTAAACGTAAATTTAGGATCAAATATACCCTAACATCGCACATTGTGGCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGGATCTATATACTGGAGGTGTATCATACAAATGCGGAACatgtaataaagagtttaagaaCAAAGCGTATTTCCTTAATCATAAGAAAATTCATGAAGACGAAAAACCTTATGAATGCGAATtttgtaaacataaatttagGTTCATAAGTAATCTAAGATCGCACGTGGTGCTAAAGCATAACACTGATGAATGTTTCAAGGCTAATAAGGATCTATATACCGGAGGTGTAACATACCAATGCGGAAcatgtaagaaaatatttaaggaCAAAACGCATTTTCGTAACCATGAAAGAATTCATAATGGTGAAAAACCTTATCAATGCAAGTTATGTGCAGAATATAAATGTAGGATCAAAGGTATCCTAATATCGCACATTGTGGCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGGATCTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAATAAACAGTTTAAGAACAAAACGGCTTTTAATAGGCATGAAAGAACTCATACAGGAGAAAAACCTTATGAATGCGATTTTTGTGAACGTAAATTTAGGATCAAAGATACCCTAACATCGCACATTGTGGCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGGATCTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAATAAACAGTTTAAGAACAAAACGGCTTTTAATAGGCATGAAAGAACTCATACAGGAGAAAAACCTTATCAATGCGAACTTTGTGAAAATGAATTTAGGACCAAAGATAACCTATCAACGCACATGGTGGCACTGCATGCCAATGATGAACGTTTCAAGTCTAATAAGCATCTGTATGTTAGAGGTAAATCATACAAATGCGaaacgtgtaataaagagtttaagaaCAAAGcgcatttaattaatcataagaAAATTCATGAAGACGAAAAACCTTATGAATGCGAATtttgtaaacataaatttagGTTCATAGGTAATCTAAGATCGCACGTGGTGCTAAAGCATAACACTGATGAACGTTTCAAGGCTAATAAGGATCTATATACCGGAGGTGTAACATACCAATGCGGAACATGTAAGAAAATGTTTAAGGACAAAACGCATTTCCTTAATCATAAGAAAATTCATGAAGACGAAAGACCTTATCCATGCGAATtttgtaaacataaatttagGACCAAAGATAACCTATCAACGCACATGGTGGCACTGCATGCCAATGATGAACGTTTCAAGTCTAATAAGCATCTGTATGTTAGAGGTAAATCATACAAATGCGaaacgtgtaataaagagtttaagaaCAAAGCGCATTTCCTTAATCATAAGAAAATTCATGAAGACGAAAAACCTTATGAATGCGAATtttgtaaacataaatttagGTTCATAGGTAATCTAAGATCGCACGTGGTGCTAAAGCATAACACTGATGAACGTTTCAAGGCTAATAGGGATCTATATACTGGAGGTGTATCCTACAAATGcggaacgtgtaataaagagtttaagtGCAAATGGAAATTCCAAAGACATGAGAGAACTCATAAAggcgaaaaaccttatcaatgcaagttttgtaaatataaatgtggTGACAAATGGAACCTAAAAAAACACGTGACTAGAAAGCATGGCAATGTTGAACGTTCCAAGTGTAATAACGATTTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAATAACGAATTTAAGAGCAAAGCGCATTTGCATATTCATGAGAGAACTCATATAggcgaaaaaccttatcaTTGTGAGTTTTGTGGAGATATGTTTAGGTGGGTACATTCTTGA
- Protein Sequence
- MNQNEETNNDTKDGQQRDKRTDAPTTLIGNNRDVQIEIRPHVCGTCDKGFKKKCDLRIHERIHNDEKPYQCELCRYKSRIKSNLTSHMVSMHADDERFKSNKHLYVRGISYKCETCNKEFKNKKNLHIHERIHNDEKPYECDFCKRKFRIKYTLTSHIVAMHADDERFKSNKDLYTGGVSYKCGTCNKEFKNKAYFLNHKKIHEDEKPYECEFCKHKFRFISNLRSHVVLKHNTDECFKANKDLYTGGVTYQCGTCKKIFKDKTHFRNHERIHNGEKPYQCKLCAEYKCRIKGILISHIVAMHADDERFKSNKDLYTGGVSYKCGTCNKQFKNKTAFNRHERTHTGEKPYECDFCERKFRIKDTLTSHIVAMHADDERFKSNKDLYTGGVSYKCGTCNKQFKNKTAFNRHERTHTGEKPYQCELCENEFRTKDNLSTHMVALHANDERFKSNKHLYVRGKSYKCETCNKEFKNKAHLINHKKIHEDEKPYECEFCKHKFRFIGNLRSHVVLKHNTDERFKANKDLYTGGVTYQCGTCKKMFKDKTHFLNHKKIHEDERPYPCEFCKHKFRTKDNLSTHMVALHANDERFKSNKHLYVRGKSYKCETCNKEFKNKAHFLNHKKIHEDEKPYECEFCKHKFRFIGNLRSHVVLKHNTDERFKANRDLYTGGVSYKCGTCNKEFKCKWKFQRHERTHKGEKPYQCKFCKYKCGDKWNLKKHVTRKHGNVERSKCNNDLYTGGVSYKCGTCNNEFKSKAHLHIHERTHIGEKPYHCEFCGDMFRWVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417760;
- 90% Identity
- iTF_00417760;
- 80% Identity
- iTF_00417760;