Ccot002445.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
-
Assembly
GCA_001594065.1
Location
NW:53956-64532[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00015 0.0093 15.8 3.6 1 23 41 63 41 63 0.97
2 20 0.00091 0.056 13.3 1.1 1 23 69 92 69 92 0.96
3 20 3.6e-06 0.00022 20.9 4.0 1 23 111 133 111 133 0.99
4 20 0.00051 0.032 14.1 1.1 1 23 139 162 139 162 0.91
5 20 4.3e-05 0.0027 17.5 2.9 1 23 181 203 181 203 0.98
6 20 0.0042 0.26 11.2 3.1 1 23 209 232 209 232 0.90
7 20 2.3e-05 0.0014 18.4 4.7 1 23 251 273 251 273 0.99
8 20 4.3e-06 0.00027 20.7 3.7 1 23 322 344 322 344 0.99
9 20 0.00049 0.03 14.2 0.4 1 23 350 373 350 373 0.91
10 20 4.3e-06 0.00027 20.7 3.7 1 23 392 414 392 414 0.99
11 20 4.6e-05 0.0028 17.4 0.3 1 23 420 443 420 443 0.92
12 20 2.5e-06 0.00015 21.4 3.7 1 23 462 484 462 484 0.98
13 20 0.0095 0.59 10.1 2.5 1 23 490 513 490 513 0.90
14 20 0.00012 0.0072 16.2 5.7 1 23 532 554 532 554 0.98
15 20 4.7e-05 0.0029 17.4 2.1 1 23 560 583 560 583 0.92
16 20 2.9e-05 0.0018 18.0 5.0 1 23 602 624 602 624 0.98
17 20 0.0095 0.59 10.1 2.5 1 23 630 653 630 653 0.90
18 20 0.006 0.37 10.8 6.3 1 23 672 694 672 694 0.99
19 20 0.0046 0.28 11.1 5.8 1 23 700 723 700 723 0.96
20 20 0.00028 0.017 15.0 4.7 1 23 742 764 742 764 0.99

Sequence Information

Coding Sequence
ATGAATCAAAATGAAGAAACGAATAACGACACAAAAGATGGACAACAGCGCGATAAGCGAACTGACGCCCCGACAACTTTAATTGGAAATAATAGAGACGTACAAATTGAAATTAGACCACACGTATGCGGAACTTGTGATAAAGGGTTTAAGAAGAAATGTGATTTGCGTATTCATGAGAGAATTCATAATGACGAAAAACCTTATCAATGCGAACTTTGTCGATATAAATCTAGGATCAAAAGTAACCTAACATCGCACATGGTGTCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGCATTTGTATGTTAGAGGAATATCATACAAATGCGaaacgtgtaataaagagtttaagaataaaaagaatttgcaTATTCATGAGAGAATTCATAATGACGAAAAACCTTATGAATGCGATTTTTGTAAACGTAAATTTAGGATCAAATATACCCTAACATCGCACATTGTGGCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGGATCTATATACTGGAGGTGTATCATACAAATGCGGAACatgtaataaagagtttaagaaCAAAGCGTATTTCCTTAATCATAAGAAAATTCATGAAGACGAAAAACCTTATGAATGCGAATtttgtaaacataaatttagGTTCATAAGTAATCTAAGATCGCACGTGGTGCTAAAGCATAACACTGATGAATGTTTCAAGGCTAATAAGGATCTATATACCGGAGGTGTAACATACCAATGCGGAAcatgtaagaaaatatttaaggaCAAAACGCATTTTCGTAACCATGAAAGAATTCATAATGGTGAAAAACCTTATCAATGCAAGTTATGTGCAGAATATAAATGTAGGATCAAAGGTATCCTAATATCGCACATTGTGGCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGGATCTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAATAAACAGTTTAAGAACAAAACGGCTTTTAATAGGCATGAAAGAACTCATACAGGAGAAAAACCTTATGAATGCGATTTTTGTGAACGTAAATTTAGGATCAAAGATACCCTAACATCGCACATTGTGGCAATGCATGCCGATGATGAACGTTTCAAGTCTAATAAGGATCTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAATAAACAGTTTAAGAACAAAACGGCTTTTAATAGGCATGAAAGAACTCATACAGGAGAAAAACCTTATCAATGCGAACTTTGTGAAAATGAATTTAGGACCAAAGATAACCTATCAACGCACATGGTGGCACTGCATGCCAATGATGAACGTTTCAAGTCTAATAAGCATCTGTATGTTAGAGGTAAATCATACAAATGCGaaacgtgtaataaagagtttaagaaCAAAGcgcatttaattaatcataagaAAATTCATGAAGACGAAAAACCTTATGAATGCGAATtttgtaaacataaatttagGTTCATAGGTAATCTAAGATCGCACGTGGTGCTAAAGCATAACACTGATGAACGTTTCAAGGCTAATAAGGATCTATATACCGGAGGTGTAACATACCAATGCGGAACATGTAAGAAAATGTTTAAGGACAAAACGCATTTCCTTAATCATAAGAAAATTCATGAAGACGAAAGACCTTATCCATGCGAATtttgtaaacataaatttagGACCAAAGATAACCTATCAACGCACATGGTGGCACTGCATGCCAATGATGAACGTTTCAAGTCTAATAAGCATCTGTATGTTAGAGGTAAATCATACAAATGCGaaacgtgtaataaagagtttaagaaCAAAGCGCATTTCCTTAATCATAAGAAAATTCATGAAGACGAAAAACCTTATGAATGCGAATtttgtaaacataaatttagGTTCATAGGTAATCTAAGATCGCACGTGGTGCTAAAGCATAACACTGATGAACGTTTCAAGGCTAATAGGGATCTATATACTGGAGGTGTATCCTACAAATGcggaacgtgtaataaagagtttaagtGCAAATGGAAATTCCAAAGACATGAGAGAACTCATAAAggcgaaaaaccttatcaatgcaagttttgtaaatataaatgtggTGACAAATGGAACCTAAAAAAACACGTGACTAGAAAGCATGGCAATGTTGAACGTTCCAAGTGTAATAACGATTTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAATAACGAATTTAAGAGCAAAGCGCATTTGCATATTCATGAGAGAACTCATATAggcgaaaaaccttatcaTTGTGAGTTTTGTGGAGATATGTTTAGGTGGGTACATTCTTGA
Protein Sequence
MNQNEETNNDTKDGQQRDKRTDAPTTLIGNNRDVQIEIRPHVCGTCDKGFKKKCDLRIHERIHNDEKPYQCELCRYKSRIKSNLTSHMVSMHADDERFKSNKHLYVRGISYKCETCNKEFKNKKNLHIHERIHNDEKPYECDFCKRKFRIKYTLTSHIVAMHADDERFKSNKDLYTGGVSYKCGTCNKEFKNKAYFLNHKKIHEDEKPYECEFCKHKFRFISNLRSHVVLKHNTDECFKANKDLYTGGVTYQCGTCKKIFKDKTHFRNHERIHNGEKPYQCKLCAEYKCRIKGILISHIVAMHADDERFKSNKDLYTGGVSYKCGTCNKQFKNKTAFNRHERTHTGEKPYECDFCERKFRIKDTLTSHIVAMHADDERFKSNKDLYTGGVSYKCGTCNKQFKNKTAFNRHERTHTGEKPYQCELCENEFRTKDNLSTHMVALHANDERFKSNKHLYVRGKSYKCETCNKEFKNKAHLINHKKIHEDEKPYECEFCKHKFRFIGNLRSHVVLKHNTDERFKANKDLYTGGVTYQCGTCKKMFKDKTHFLNHKKIHEDERPYPCEFCKHKFRTKDNLSTHMVALHANDERFKSNKHLYVRGKSYKCETCNKEFKNKAHFLNHKKIHEDEKPYECEFCKHKFRFIGNLRSHVVLKHNTDERFKANRDLYTGGVSYKCGTCNKEFKCKWKFQRHERTHKGEKPYQCKFCKYKCGDKWNLKKHVTRKHGNVERSKCNNDLYTGGVSYKCGTCNNEFKSKAHLHIHERTHIGEKPYHCEFCGDMFRWVHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00417962;
90% Identity
iTF_00417962;
80% Identity
iTF_00417962;