Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: zfy1_3
Assembly: GCA_001594065.1
Location: NW:597094-608851[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00014 0.34 10.5 0.2 20 49 65 94 41 97 0.91

2 9 1.7 4.1e+03 -2.6 0.0 27 46 114 132 113 136 0.82

3 9 0.057 1.3e+02 2.2 0.3 21 49 136 164 132 167 0.91

4 9 0.054 1.3e+02 2.2 0.0 20 49 205 234 197 237 0.88

5 9 0.061 1.4e+02 2.1 0.1 20 49 275 304 259 307 0.85

6 9 6.2e-06 0.015 14.9 0.2 22 49 347 374 341 377 0.92

7 9 3.2e-05 0.076 12.6 0.0 21 49 416 444 404 447 0.88

8 9 3.2e-05 0.076 12.6 0.0 21 49 486 514 474 517 0.88

9 9 0.036 84 2.8 0.2 21 49 556 584 553 587 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00014	0.34	10.5	0.2	20	49	65	94	41	97	0.91
2	9	1.7	4.1e+03	-2.6	0.0	27	46	114	132	113	136	0.82
3	9	0.057	1.3e+02	2.2	0.3	21	49	136	164	132	167	0.91
4	9	0.054	1.3e+02	2.2	0.0	20	49	205	234	197	237	0.88
5	9	0.061	1.4e+02	2.1	0.1	20	49	275	304	259	307	0.85
6	9	6.2e-06	0.015	14.9	0.2	22	49	347	374	341	377	0.92
7	9	3.2e-05	0.076	12.6	0.0	21	49	416	444	404	447	0.88
8	9	3.2e-05	0.076	12.6	0.0	21	49	486	514	474	517	0.88
9	9	0.036	84	2.8	0.2	21	49	556	584	553	587	0.91

Sequence Information

Coding Sequence: atgaatcgcCATGAGGGAAAAAATAACGACAAAAAAGATGTTCCCCAACATTACGatgTGCGCTCCGAATCCCTGACAAGTGCGAATCGGCATAATATAGACGTACAAGTTAAAATGAGACCACACAAATGcggaacgtgtaataaagaatttaagaaCAAATCGCATCTGAGTAGACATGAAAGAACACATAATGGCGAAAAACCTTACCAATGCGAATTTTGTGAAAAGACATTTAGTCAAAATGGAAATCTTAGACAGCATATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGCGGTGTATCATACAAATGcggaacgtgtaataaagTGTTTAAGAGCAAAGCGCAACTGTGTAGACATGAGCTTATTCATAAAGGCGAAAAACCTTACCGTTGTGAGTTTTGTAGACAAATGTTTAGGTACAAAACAAGCCTACAAGAGCACTATGTGGCAAAACATTACGATGATGAACGTTACATGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGcggaacgtgtaataaagagttCAAGAACAAAACGCATCTGACTAATCATGAAAGAACACATAATGGCGAAAAACCTTACCAATGCGAATTTTGTGAAAAGATATTTAGGCTCAAAGCAACCCTAATAGAGCACATAGTGGCAAAGCATTACGATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAGTAAAgcgtttaaaaagaaaacgcaTCTGACTAAACATGAAAGAACACATAATGGCGAAAAACCTTACCAATGCGAATTTTGTGAAAAGACATTTAGTCTAAATCAAAATCGAAGACTTCACATGGTGTCAAAGCATTACAATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGcggaacgtgtaataaagagtttatGCAGAAATCGATACTGCGTGTTCATGAGAGGACTCATATTAGAAAACAACCATACCTTTGTGAGTTTTGTGGACTAGTGTTCAGtcaaaatgtaaatttaagaCGGCACATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCCAATAAGGACCTATATACTGGAGGTGTAACATACAAATGcggaacgtgtaataaagagtttaaaaaCAAAGCGCATCTGACTAAACATGAAAGAACACATAATGGCGATAAACCTtacaaatgcgaattttgcgGAATGACATTTAGTCAAAATAACAATCTAAGACGGCACATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCCAATAAGGACCTATATACTGGAGGTGTAACATACAAATGcggaacgtgtaataaagagtttaaaaaCAAAGCGCATCTGACTAAACATGAAAGAACACATAATGGCGATAAACCTtacaaatgcgaattttgcgGAATGACATTTAGTCAAAATAACAATCTAAGACGGCACATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATGCAAATGTggaacgtgtaataaagaatttaaaaccaAAGCGCAACTGTGTAGACATGAGCTTATTCATACAGGCGAGAAACCTTACCAATGTGAGTTTTGTAGTCAAATATTTAGTCAAAATGGACATCGAAGACAGCACATAGTGGCAACGCATTACAACGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGcggaacgtgtaataaagagtttaagcACAAATCGATACTGATAGTTCATGAGAGGACTCATATTAGAAAACAACCATACCTTTatatgaaaagAGTCCTCTTACCAAATGAATACCTTGGTTATCACATAGACTCGGAGCACAAAGGTAGAAAACAACATCCTTGCGAGTCATTATTATCAAATCTCAAGTCACGATTAAAACTTCTAATCGAAGATGCAGTGCCTAAATACCACAACGTCAGTGGTTGGTGA
Protein Sequence: MNRHEGKNNDKKDVPQHYDVRSESLTSANRHNIDVQVKMRPHKCGTCNKEFKNKSHLSRHERTHNGEKPYQCEFCEKTFSQNGNLRQHMVAKHYNDERYKSNKDLYTGGVSYKCGTCNKVFKSKAQLCRHELIHKGEKPYRCEFCRQMFRYKTSLQEHYVAKHYDDERYMSNKDLYTGGVSYKCGTCNKEFKNKTHLTNHERTHNGEKPYQCEFCEKIFRLKATLIEHIVAKHYDDERYKSNKDLYTGGVSYKCGTCSKAFKKKTHLTKHERTHNGEKPYQCEFCEKTFSLNQNRRLHMVSKHYNDERYKSNKDLYTGGVSYKCGTCNKEFMQKSILRVHERTHIRKQPYLCEFCGLVFSQNVNLRRHMVAKHYNDERYKSNKDLYTGGVTYKCGTCNKEFKNKAHLTKHERTHNGDKPYKCEFCGMTFSQNNNLRRHMVAKHYNDERYKSNKDLYTGGVTYKCGTCNKEFKNKAHLTKHERTHNGDKPYKCEFCGMTFSQNNNLRRHMVAKHYNDERYKSNKDLYTGGVSCKCGTCNKEFKTKAQLCRHELIHTGEKPYQCEFCSQIFSQNGHRRQHIVATHYNDERYKSNKDLYTGGVSYKCGTCNKEFKHKSILIVHERTHIRKQPYLYMKRVLLPNEYLGYHIDSEHKGRKQHPCESLLSNLKSRLKLLIEDAVPKYHNVSGW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417753;
90% Identity: iTF_00417753;
80% Identity: iTF_00417753;