Ccot002021.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
zfy1
Assembly
GCA_001594065.1
Location
NW:597094-608851[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 4.5e-06 0.00028 20.6 7.1 1 23 42 64 42 64 0.98
2 17 4.8e-07 3e-05 23.7 0.9 1 23 70 93 70 93 0.93
3 17 2.3e-06 0.00014 21.5 2.8 1 23 112 134 112 134 0.98
4 17 0.0013 0.082 12.8 2.2 1 21 140 160 140 163 0.90
5 17 1.8e-06 0.00011 21.9 5.1 1 23 182 204 182 204 0.99
6 17 0.00043 0.027 14.4 0.2 1 23 210 233 210 233 0.91
7 17 5.6e-06 0.00035 20.3 5.6 1 23 252 274 252 274 0.99
8 17 0.00077 0.047 13.6 2.0 1 23 280 303 280 303 0.96
9 17 0.00012 0.0072 16.2 1.3 1 23 322 344 322 344 0.99
10 17 4.4e-06 0.00027 20.6 0.3 1 23 350 373 350 373 0.90
11 17 5.6e-07 3.4e-05 23.5 4.4 1 23 392 414 392 414 0.99
12 17 2.7e-07 1.7e-05 24.5 1.2 1 23 420 443 420 443 0.93
13 17 5.6e-07 3.4e-05 23.5 4.4 1 23 462 484 462 484 0.99
14 17 2.7e-07 1.7e-05 24.5 1.2 1 23 490 513 490 513 0.93
15 17 0.00014 0.0086 15.9 5.4 2 23 533 554 532 554 0.95
16 17 0.0018 0.11 12.4 1.5 1 23 560 583 560 583 0.91
17 17 6.9e-05 0.0043 16.9 2.6 1 23 602 624 602 624 0.99

Sequence Information

Coding Sequence
atgaatcgcCATGAGGGAAAAAATAACGACAAAAAAGATGTTCCCCAACATTACGatgTGCGCTCCGAATCCCTGACAAGTGCGAATCGGCATAATATAGACGTACAAGTTAAAATGAGACCACACAAATGcggaacgtgtaataaagaatttaagaaCAAATCGCATCTGAGTAGACATGAAAGAACACATAATGGCGAAAAACCTTACCAATGCGAATTTTGTGAAAAGACATTTAGTCAAAATGGAAATCTTAGACAGCATATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGCGGTGTATCATACAAATGcggaacgtgtaataaagTGTTTAAGAGCAAAGCGCAACTGTGTAGACATGAGCTTATTCATAAAGGCGAAAAACCTTACCGTTGTGAGTTTTGTAGACAAATGTTTAGGTACAAAACAAGCCTACAAGAGCACTATGTGGCAAAACATTACGATGATGAACGTTACATGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGcggaacgtgtaataaagagttCAAGAACAAAACGCATCTGACTAATCATGAAAGAACACATAATGGCGAAAAACCTTACCAATGCGAATTTTGTGAAAAGATATTTAGGCTCAAAGCAACCCTAATAGAGCACATAGTGGCAAAGCATTACGATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGCGGAACGTGTAGTAAAgcgtttaaaaagaaaacgcaTCTGACTAAACATGAAAGAACACATAATGGCGAAAAACCTTACCAATGCGAATTTTGTGAAAAGACATTTAGTCTAAATCAAAATCGAAGACTTCACATGGTGTCAAAGCATTACAATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGcggaacgtgtaataaagagtttatGCAGAAATCGATACTGCGTGTTCATGAGAGGACTCATATTAGAAAACAACCATACCTTTGTGAGTTTTGTGGACTAGTGTTCAGtcaaaatgtaaatttaagaCGGCACATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCCAATAAGGACCTATATACTGGAGGTGTAACATACAAATGcggaacgtgtaataaagagtttaaaaaCAAAGCGCATCTGACTAAACATGAAAGAACACATAATGGCGATAAACCTtacaaatgcgaattttgcgGAATGACATTTAGTCAAAATAACAATCTAAGACGGCACATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCCAATAAGGACCTATATACTGGAGGTGTAACATACAAATGcggaacgtgtaataaagagtttaaaaaCAAAGCGCATCTGACTAAACATGAAAGAACACATAATGGCGATAAACCTtacaaatgcgaattttgcgGAATGACATTTAGTCAAAATAACAATCTAAGACGGCACATGGTGGCAAAGCATTACAATGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATGCAAATGTggaacgtgtaataaagaatttaaaaccaAAGCGCAACTGTGTAGACATGAGCTTATTCATACAGGCGAGAAACCTTACCAATGTGAGTTTTGTAGTCAAATATTTAGTCAAAATGGACATCGAAGACAGCACATAGTGGCAACGCATTACAACGATGAACGTTACAAGTCTAATAAGGACCTATATACTGGAGGTGTATCATACAAATGcggaacgtgtaataaagagtttaagcACAAATCGATACTGATAGTTCATGAGAGGACTCATATTAGAAAACAACCATACCTTTatatgaaaagAGTCCTCTTACCAAATGAATACCTTGGTTATCACATAGACTCGGAGCACAAAGGTAGAAAACAACATCCTTGCGAGTCATTATTATCAAATCTCAAGTCACGATTAAAACTTCTAATCGAAGATGCAGTGCCTAAATACCACAACGTCAGTGGTTGGTGA
Protein Sequence
MNRHEGKNNDKKDVPQHYDVRSESLTSANRHNIDVQVKMRPHKCGTCNKEFKNKSHLSRHERTHNGEKPYQCEFCEKTFSQNGNLRQHMVAKHYNDERYKSNKDLYTGGVSYKCGTCNKVFKSKAQLCRHELIHKGEKPYRCEFCRQMFRYKTSLQEHYVAKHYDDERYMSNKDLYTGGVSYKCGTCNKEFKNKTHLTNHERTHNGEKPYQCEFCEKIFRLKATLIEHIVAKHYDDERYKSNKDLYTGGVSYKCGTCSKAFKKKTHLTKHERTHNGEKPYQCEFCEKTFSLNQNRRLHMVSKHYNDERYKSNKDLYTGGVSYKCGTCNKEFMQKSILRVHERTHIRKQPYLCEFCGLVFSQNVNLRRHMVAKHYNDERYKSNKDLYTGGVTYKCGTCNKEFKNKAHLTKHERTHNGDKPYKCEFCGMTFSQNNNLRRHMVAKHYNDERYKSNKDLYTGGVTYKCGTCNKEFKNKAHLTKHERTHNGDKPYKCEFCGMTFSQNNNLRRHMVAKHYNDERYKSNKDLYTGGVSCKCGTCNKEFKTKAQLCRHELIHTGEKPYQCEFCSQIFSQNGHRRQHIVATHYNDERYKSNKDLYTGGVSYKCGTCNKEFKHKSILIVHERTHIRKQPYLYMKRVLLPNEYLGYHIDSEHKGRKQHPCESLLSNLKSRLKLLIEDAVPKYHNVSGW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00417959;
90% Identity
iTF_00417959;
80% Identity
iTF_00417959;