Ccot003172.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
-
Assembly
GCA_001594065.1
Location
NW:566081-570677[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0004 0.025 14.5 2.7 2 23 364 385 363 385 0.97
2 15 0.00046 0.028 14.3 3.8 2 23 392 414 391 414 0.95
3 15 3.2e-05 0.002 17.9 1.6 2 23 493 514 492 514 0.97
4 15 2.8e-05 0.0017 18.1 4.3 1 23 520 542 520 543 0.96
5 15 0.0013 0.081 12.8 1.5 1 23 548 570 548 570 0.97
6 15 3e-06 0.00019 21.1 1.3 1 23 588 610 588 610 0.98
7 15 9.8e-07 6e-05 22.7 1.2 1 23 616 638 616 638 0.97
8 15 4.4e-06 0.00027 20.6 2.4 1 23 644 666 644 666 0.98
9 15 0.0018 0.11 12.4 0.2 1 23 672 694 672 694 0.99
10 15 3.4e-05 0.0021 17.8 1.1 1 23 700 723 700 723 0.92
11 15 1.5e-05 0.00095 18.9 1.3 1 23 729 751 729 751 0.98
12 15 0.00034 0.021 14.7 4.7 1 23 757 779 757 779 0.98
13 15 4.3e-06 0.00027 20.7 0.4 1 23 785 808 785 808 0.97
14 15 3.1e-06 0.00019 21.1 0.9 1 23 814 836 814 836 0.96
15 15 7.4e-07 4.6e-05 23.1 4.8 1 23 842 864 842 864 0.99

Sequence Information

Coding Sequence
atgaacaaaGAAATGCCATTAAGTGTGGAATGGATACCAcaaaatgcatatataaacaattcttTGGATCACTCGCTACCGGAAGACAGAAATCAGGACTTCTTAATCATAAAGCAAAAAACAGAGTTCTTTCAAAGTACCTTGAATTCACAACAGTCTGCGCAAAACAAAATCGTGCATCTACAAGTTTTGTCTAAAGAGAACAAGGAAATCAAACAAGAGAGTAgttatttaaatgcaaaaCCCTGCCAAACAGATTCTTTAAATCAGCCATCCAAAGGATTGACTGATGATtcggaaaaattatataataaaggtCGCATCGACGTAATAGAGATGACAGTAGATTCAACGTtgaattataagtatttttttgtttatgaaGATCAGGTTTCCAAATTTGTTATACTAAGGGCTCTCCATAGCAATACAGCTAAAGAGGTTGCAACAAATTTGTTAGATGTATTGGGAATCATAGGAGTACCGCGAGTATTACAGAGCGGCAATGGACGTATGTTTGCTGAACAAGTTGTATGTGAACTACATTCGATATGGAATGATTTGTTCATACTGCATGGAGACACATCTAAATGCGAAGTTAGCTGCAGGGATTTTAAGAGTTTGCTTGAATCttggatgaaaaaaaatccaaCTAAGACCTGGTGCGAGGGACTGAACTTTATACAGATTGTTCATAACACGACATATCGCTATCAGAACGGTAGAGTTCCATATGACATATTGTTCAAACAAAATGCATGTGAAAATTTTCAAGGTATTGGAAAAGATACAGAAAATTTGAGAACAGAAGAAGAATTGATTAAACATTTGTCGAATAAAATGGATGGAGGTGAGGCAATGACGGAAGACACACAGAGTACATCAAACAATACCAATCATTGCGAAGAGAAcgaaaatatacgaaatacaCAGAGTCAAAATGCACTTTTAAAGACCGACGATGCAAACTTTAATTGCGTCATCGTGAAGAATGAGTCTCTGAATAATGTACATACGATGGATTCAATATCTACAGATAAAATAGCCATGAAGAGTGATTCGAAAGTCAATGAAGATACTCAATCCCTCAAATGCCAGTACTGTCAAAAGCAATACATGAAAATAGGGCATTTGAAAAATCACATAAGAATTCACAAAGCAAAACAGGTTCTTCATTGCAAGCTGTGCAATAAAACGTTTAGCGTTCTGAGATTATTCGAGAAGCATATGAAACAATCACATGGAAAAGATAAAGCTGATGAAGAAAAAGGGATATCGGTCAGAAAAACGAGAAATATTACCAATGCAAAATCTATTCAAATAACACATGAAACATTCAATCCTGAAATAATAAACGAAAATTGTGATGTGTCACTCGACACGAGAGAATCCTCTAGCAAAGTCAATAAGAGTCCCAACCAAACGGGGAAACGGAAACTGCCCGCGGAGAACCGCATATCAAAGACACAATCTCTAAAGTGTACATTTTGTAAGCAAAAATTCAGCTTTCCAAGCGTGCTAGAAAGACATATCCGATCGCACACCAACGAACGGCCGTACGAGTGCGAAGTATGTAAAAAGAGTTTCAAGCAACTGGGTCATCTTAGTCAACATTCACTGACCCATCATGACTATCGTTCGTTCCAGTGTACAGTATGCAGTGTAAAGTTTGACTCGTTGGATTTACTGAAGCAACATGCGCACTCGCATAAAGGTGACACCACGACAACGACATCGAAGGTACGTGATGTCTATCGTCTGTTTGAGTGTGACAGCTGTAAAAAGGTATTCACAACGAAAAGCGTACTAGAGCGACACATATTCACGCACACGCAGGAACGTCAGTACGATTGTAAGGTATGCGGCAAGCGATTCAAGCAAGCTGGTCACGTCAAGTCGCACATGTTGGTGCACACTGGTGAGCGTCGTTTTCAGTGTACCATATGTTCAAAACGTTTCAGTCTCTCGAACTCGTTGAAGAAACACATGTACGTGCACAACGGCGAAAAGCCGTATCAGTGCGATGTGTGCGGTGCACGTTTCCTTGAGAGGCGCAACCTCAACGGCCACTTGCTGACGCACACCAATGAGCGTCCGTACTGCTGTAAGATCTGCGGTAAACGGTACACCCTAGCGGACACTCTGCGCCGTCACGTCAGTGCCGCGCATGAAGATGGTCGTACGTACCAATGCGAGATTTGTGCCAAAATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAAAAGGTACATAACGACGAACGACCGTTCCAATGTCATTTATGCGAAAAGAACTTCAAGCATAAGAACGTACTCAAGTCGCACCTGGCGATTCATGCGAACGTACGGCCATTCGAGTGTGATGTATGCAAGGCGACGTTTGTCAGGAAGACGAATCTGCAAACGCACATTTCGTCGGCGCACATGAACGAGCGTCCATATACCTGTACTATCTGCGGCAAGCGATTTAAGCAGATCAGTCATCTAAACGGTCACGTTGTAGTGCATAGCAATTTGATGCCTTACAAGTGCGATTATTGCGATCGCCGATGCAATCGACTAGATAATTTGAAGAAGCATATGCGCCTTCATACGAAAAATAaggaataa
Protein Sequence
MNKEMPLSVEWIPQNAYINNSLDHSLPEDRNQDFLIIKQKTEFFQSTLNSQQSAQNKIVHLQVLSKENKEIKQESSYLNAKPCQTDSLNQPSKGLTDDSEKLYNKGRIDVIEMTVDSTLNYKYFFVYEDQVSKFVILRALHSNTAKEVATNLLDVLGIIGVPRVLQSGNGRMFAEQVVCELHSIWNDLFILHGDTSKCEVSCRDFKSLLESWMKKNPTKTWCEGLNFIQIVHNTTYRYQNGRVPYDILFKQNACENFQGIGKDTENLRTEEELIKHLSNKMDGGEAMTEDTQSTSNNTNHCEENENIRNTQSQNALLKTDDANFNCVIVKNESLNNVHTMDSISTDKIAMKSDSKVNEDTQSLKCQYCQKQYMKIGHLKNHIRIHKAKQVLHCKLCNKTFSVLRLFEKHMKQSHGKDKADEEKGISVRKTRNITNAKSIQITHETFNPEIINENCDVSLDTRESSSKVNKSPNQTGKRKLPAENRISKTQSLKCTFCKQKFSFPSVLERHIRSHTNERPYECEVCKKSFKQLGHLSQHSLTHHDYRSFQCTVCSVKFDSLDLLKQHAHSHKGDTTTTTSKVRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLERRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476420; iTF_00182759; iTF_00182120; iTF_00181463; iTF_00016831; iTF_00015537;
90% Identity
-
80% Identity
-