Acoo002351.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atta colombica
Gene Symbol
-
Assembly
GCA_001594045.1
Location
NW:565742-570118[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00022 0.012 15.2 2.2 2 23 364 385 363 385 0.97
2 15 0.00045 0.024 14.3 3.8 2 23 392 414 391 414 0.95
3 15 1.7e-05 0.00092 18.7 2.0 2 23 492 513 491 513 0.97
4 15 2.7e-05 0.0014 18.1 4.3 1 23 519 541 519 542 0.96
5 15 0.0022 0.12 12.1 0.6 1 20 547 566 547 569 0.94
6 15 2.2e-06 0.00012 21.6 0.8 1 23 587 609 587 609 0.98
7 15 9.6e-07 5.1e-05 22.7 1.2 1 23 615 637 615 637 0.97
8 15 4.3e-06 0.00023 20.6 2.4 1 23 643 665 643 665 0.98
9 15 0.0011 0.057 13.1 0.2 1 23 671 693 671 693 0.99
10 15 3.3e-05 0.0018 17.8 1.1 1 23 699 722 699 722 0.92
11 15 1.5e-05 0.00081 18.9 1.3 1 23 728 750 728 750 0.98
12 15 0.00033 0.018 14.7 4.7 1 23 756 778 756 778 0.98
13 15 4.2e-06 0.00022 20.7 0.4 1 23 784 807 784 807 0.97
14 15 3e-06 0.00016 21.1 0.9 1 23 813 835 813 835 0.96
15 15 7.3e-07 3.9e-05 23.1 4.8 1 23 841 863 841 863 0.99

Sequence Information

Coding Sequence
atgaacaaAGAAATGCCGTTAAGTGTGGAATGGATAtcacaaaatacatatatgcacaATTCTTTCGACCACTTGCTACCGGaagataaaaatcaagatttcttAATCATAAAGCAAGAAGCAGAATTCTTTCAAAGTACTCTGAATTCACAGCAATCTGCACAAAACAAAATCATGCATCTGCAAGTTTTGTCTAAAGAGAATAAGGAAATCAAACAACAGAACAGTTATTTAGATCCAACaTGTTTTCAGCCCTGTCAAATAGATTCTTTAAATCAACTATCCAAAAGATTGACTGATGATTCAgagaaattgtataataaaggTCGCATCGACGTAATAGAGATGACAATTGATTCaacattgaattataaatatttttttgtttatgaaGATCAATTTTCCAAATTTGTTGTACTAAAGGCTCTCCGTAGCAATACAGCTAAAGAGGTTGCGGCGAATCTATTAGATGTATTGGGGATCATAGGAGCACCACAAGTATTACAGAGCGGCAATGGACGTATGTTTGCTGAACAAATTGTATGTGAACTACGTTCGATGTGGCATGATTTATTCATACTGCATGGAGACACGTCTAAGTGCGAAGTTAGCTACAGGGATTTTAAGAGCTCACTTGAATCttggatgaaaaaaaatccaaCTAGAACCTGGTGCGAGGGACTGAACTTCATACAGATTGTTCATAACACTACGTATCGCTATCAGAATGGCAGAGTTCCATATGACGTATTGTTCAGACAAAATGCACGCAAGAATTTTCAAGGTATAGGAAAAGATACAGAAAATTTGACAACAGAAGAAGAATGGATTAAACATTTGTCGGATAAGATGGATGGAGGTGAGGCTGCAATGATGGAAGACACACAGAGtacatcaaataatatcaatCAGTGCGaagaaaacgaaaatataCGAGATACACAgaatcaaaatacaaaaaccAACAATGCAAATATTCTTAGTTGTATCGTGAAGAATGATGATCTGAATAATGTACATATGATGGATTCAACATCTACCGATAAAATAGTCATAAAGAATGAATCAAAAGAAGATACTCAATCCCTCAAATGCGAGTACTGTCAAAagcaatatatgaaaataggGCATTTGAAAAACCACATAAGAATTCACAAAGCGAAACAGATTCTCCATTGTAAGCTGTGCAATAAAACGTTTAGCGTTCTGAGATTGTTTGAGAAACATATGAAGCAATCACATGGAAAAGATAAAGctgaagaaagagagataccaatcagaaaaacaagaaacattGCTAATACAAGATCTATGATTCAACTAACACAAGAAACGTCCGATctcaaaatgaatgaaaattgtGATTTGTCGCTTGATACGAGAGAATCCTTTGGCAAAGACAATAAGAGCTCCAACCAAACCGGGAGACGGAAACTGCCCGCGGAGAATCGTGTATCAAAGACACAACCTCTAAAGTGTACGTTTTGTAAGCAGAAATTCAGTTTTCCGAGCGTGCTAGAAAGACATATGCGATCGCACACAAATGAACGACCGTACGAATGCGAAGTATGTAAAAAGAGTTTTAAACAACTGGGTCATCTCAGTCAACACTCACTGACCCATCATGACTATCGTTCATTCCAGTGCACAGTATGCAGCATAAAGTTCGACTCGCTAGATTTGCTGAAGCAACATACACCCTCGCATAAAAGCGACGCCACGACAACGACATCAAAGGTACGCGATGTTTATCGTCTGTTTGAATGTGATATCTGCAAAAAGGTATTCACAATGAAGAGTGTGCTAGAGCGACATATATTCACGCACACGCAGGAACGTCATTATGACTGTAAGGTGTGCGGCAAGCGATTCAAGCAAGCTGGTCATGTCAAGTCACACATGTTGGTACATACTGGCGAGCGTCGTTTTCAGTGCACCATATGTTCAAAACGTTTCAGTCTGTCAAACTCGTTGAAGAAGCACATGTACGTGCACAATGGTGAAAAGCCATATCAGTGCGATGTTTGCGGTGCACGTTTCCTTGAGAAGCGCAACCTTAACGGCCACTTGCTGACGCATACCAACGAACGTCCGTACTGCTGCAAGATCTGCGGTAAACGGTATACTCTGGCGGACACTTTGCGCCGTCATGTCAGTGCCGCGCATGAAGATGGTCGTACATATCAGTGTGAGATTTGTGCCAAGATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAAAAGGTACATAACGACGAACGACCGTTTCAGTGTCATTTATGCGAAAAGAACTTCAAGCATAAGAATGTACTCAAGTCACACCTGGCAATCCACGCGAATGTACGGCCATTCGAGTGTGATGTATGCAAGGCGACATTTGTCAGGAAGACGAATCTGCAGACGCACATCTCGTCAGCGCACATGAACGAGCGTCCGTATACCTGCACCATCTGCGGCAAGCGCTTTAAGCAGATTAGTCATCTAAATGGCCACGTGGTAGTGCATAGCAATTTGATGCCTTACAAGTGTGATTACTGCGATCGCCGATGCAATCGactagataatttaaaaaagcatatgcgccTCCATACgaaaaataaggaataa
Protein Sequence
MNKEMPLSVEWISQNTYMHNSFDHLLPEDKNQDFLIIKQEAEFFQSTLNSQQSAQNKIMHLQVLSKENKEIKQQNSYLDPTCFQPCQIDSLNQLSKRLTDDSEKLYNKGRIDVIEMTIDSTLNYKYFFVYEDQFSKFVVLKALRSNTAKEVAANLLDVLGIIGAPQVLQSGNGRMFAEQIVCELRSMWHDLFILHGDTSKCEVSYRDFKSSLESWMKKNPTRTWCEGLNFIQIVHNTTYRYQNGRVPYDVLFRQNARKNFQGIGKDTENLTTEEEWIKHLSDKMDGGEAAMMEDTQSTSNNINQCEENENIRDTQNQNTKTNNANILSCIVKNDDLNNVHMMDSTSTDKIVIKNESKEDTQSLKCEYCQKQYMKIGHLKNHIRIHKAKQILHCKLCNKTFSVLRLFEKHMKQSHGKDKAEEREIPIRKTRNIANTRSMIQLTQETSDLKMNENCDLSLDTRESFGKDNKSSNQTGRRKLPAENRVSKTQPLKCTFCKQKFSFPSVLERHMRSHTNERPYECEVCKKSFKQLGHLSQHSLTHHDYRSFQCTVCSIKFDSLDLLKQHTPSHKSDATTTTSKVRDVYRLFECDICKKVFTMKSVLERHIFTHTQERHYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00417757;
90% Identity
iTF_01476420;
80% Identity
-